Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1680 ATGATGAGACCCCGCTTCAGGTTTCTCGTGGAAAAAGCACTTCGCAAAGAGTTCACAGATTGGTCTTCAAGTGATGCACTGACACTTCTGAACTATTTTGCTATTGCGGTAACTATAATTGTTGTTGCTGTTCCAGAAGGATTACCATTGGCAGTGACTTTGAGCCTTGCCTTTGCAATGAAAAAATTAATGAAGGAGAAGGCACTTGTGAGACATCTATCTGCATGTGAGACAATGGGTTCTGCTAGTTGTATTTGCACAGATAAGACAGGAACATTAACTACAAATCACATGGTAGTTCATAAGATATGGATCTGTGGAAAAGCTGAAGAGATAAAAGGTAGTGAGAGTGCAGATGTATTGAAATCAGAAATATCTGGAAGAGTTTCAAGCATCCTTTTGCAGGCTATATTTCAAAATACCAGTTCTGAGGTGGTCAAGGACAAAGATGGAAAGAATACCATCTTAGGAACACCAACTGAGTCAGCATTGCTAGAGTTTGGTTTGCTTTTAGGTGGTAATTTTGATGCACAACGCAAAGAAAATAAGATAGTTGAAGTTGAGCCTTTCAATTCTGTCAAGAAGAAGATGTCTGTGCTTGTGGCTCTTCCTGATGGCAGAATCCGAGCTTTTTGTAAAGGTGCATCTGAGATAATCTTATCCATGTGCAACAAGATTGTTAATTATGATGGAGAATCTATTCCTCTCTCGGAAGTACAGGAAAGGAATATTACTGATATTATAAATGGTTTTGCATCTGAAGCCTTGAGAACCCTCTGCTTGGCTTTCAAAGATGTGGATGATCCTTCCAATGAAAACGACATCCCAACTTATGGCTATACGTTGATAATGGTTGTTGGGATTAAGGATCCAACACGTCCTGGGGTCAAAGATGCTGTTCAAACTTGTTTAGCAGCTGGAATTGCTGTCCGGATGGTCACTGGTGACAATATAAACACAGCCAAAGCTATAGCTAAAGAATGTGGCATACTAACAGAGGATGGTTTGGCCATAGAAGGACCTGAATTTCACAGCATGAGTCTTGAGGAGATGAGGGAAATAATACCAAGAATTCAGGTCATGGCTCGGTCTTTGCCTTCAGACAAGCACACTTTGGTAACCCATCTCAGGAAATTGTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATGATGCACCAGCTTTGCATGAGGCTGACATTGGGCTTGCCATGGGCATAGCTGGAACAGAGGTTGCCAAAGAAAATGCTGATGTCATCATAATGGACGATAATTTTGCCACTATAGTAAATGTAGCCAAATGGGGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACTAATGAAAAGGCCTCCTGTTGGGAGGAGTGTGAGTTTTATCACCAAGACCATGTGGAGGAATATTATCGGTCAGAGTATATATCAACTGATCGTCATCGGAGTCATCAGTGTTTATGGGAAGCGGCTTTTAAGACTTAGTGGTTCAGATGCGAGTGATATCATTGATACTTTCATATTCAACACCTTTGTGTTCTGCCAGCTGTTCAATGAAATAAACAGCCGTGATATTGAGAAGATAAACATTTTTCGTGGTATGTTTGACAGCTGGATATTTATCATAGTCATGGTCTGCACAGTGGCATTCCAAATAATTATAGTTGAGCTCCTGGGCACCTTTGCAAGCACTGTGCCCCAAAGTTGGCAACTATGGATATTGAGCATCTTGATCGGAGCGGTAGGCATGCCTGTTGCAGTTGTTTTAAAATGCATCCCAGTTGAAACAGGCAGTTTTAAGCAGCATGATGATTACGAGGCACTACCTAGTGGACCAGAACAGGCATGA 2010 0.4199 MMRPRFRFLVEKALRKEFTDWSSSDALTLLNYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMKEKALVRHLSACETMGSASCICTDKTGTLTTNHMVVHKIWICGKAEEIKGSESADVLKSEISGRVSSILLQAIFQNTSSEVVKDKDGKNTILGTPTESALLEFGLLLGGNFDAQRKENKIVEVEPFNSVKKKMSVLVALPDGRIRAFCKGASEIILSMCNKIVNYDGESIPLSEVQERNITDIINGFASEALRTLCLAFKDVDDPSNENDIPTYGYTLIMVVGIKDPTRPGVKDAVQTCLAAGIAVRMVTGDNINTAKAIAKECGILTEDGLAIEGPEFHSMSLEEMREIIPRIQVMARSLPSDKHTLVTHLRKLYGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFATIVNVAKWGRAVYINIQKFVQFQLTVNVVALVVNFVSACITGSAPFTAVQLLWVNLIMDTLGALALATEPPNDALMKRPPVGRSVSFITKTMWRNIIGQSIYQLIVIGVISVYGKRLLRLSGSDASDIIDTFIFNTFVFCQLFNEINSRDIEKINIFRGMFDSWIFIIVMVCTVAFQIIIVELLGTFASTVPQSWQLWILSILIGAVGMPVAVVLKCIPVETGSFKQHDDYEALPSGPEQA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1680 669 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 92 296 IPR023299 GO:0000166
Vvi8g1680 669 SUPERFAMILY Calcium ATPase, transmembrane domain M 29 647 IPR023298 -
Vvi8g1680 669 NCBIfam HAD-IC family P-type ATPase 27 114 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g1680 669 NCBIfam HAD-IC family P-type ATPase 352 476 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g1680 669 PRINTS H+-transporting ATPase (proton pump) signature 387 403 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g1680 669 PRINTS H+-transporting ATPase (proton pump) signature 244 262 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g1680 669 PRINTS H+-transporting ATPase (proton pump) signature 419 444 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g1680 669 FunFam Calcium-transporting ATPase 96 291 - -
Vvi8g1680 669 NCBIfam calcium-translocating P-type ATPase, PMCA-type 9 649 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi8g1680 669 SFLD Haloacid Dehalogenase 68 439 - -
Vvi8g1680 669 PRINTS P-type cation-transporting ATPase superfamily signature 387 406 - -
Vvi8g1680 669 PRINTS P-type cation-transporting ATPase superfamily signature 86 100 - -
Vvi8g1680 669 PRINTS P-type cation-transporting ATPase superfamily signature 284 295 - -
Vvi8g1680 669 PRINTS P-type cation-transporting ATPase superfamily signature 306 316 - -
Vvi8g1680 669 PRINTS P-type cation-transporting ATPase superfamily signature 411 423 - -
Vvi8g1680 669 Pfam Cation transporting ATPase, C-terminus 472 645 IPR006068 -
Vvi8g1680 669 Gene3D - 99 289 IPR023299 GO:0000166
Vvi8g1680 669 Gene3D - 6 98 - -
Vvi8g1680 669 SUPERFAMILY HAD-like 85 492 IPR036412 -
Vvi8g1680 669 ProSitePatterns E1-E2 ATPases phosphorylation site. 88 94 IPR018303 -
Vvi8g1680 669 FunFam Calcium-transporting ATPase 404 650 - -
Vvi8g1680 669 SFLD p-type atpase 68 439 IPR044492 -
Vvi8g1680 669 Pfam Cation transport ATPase (P-type) 142 226 - -
Vvi8g1680 669 PANTHER CATION TRANSPORTING ATPASE 15 648 - -
Vvi8g1680 669 FunFam Calcium-transporting ATPase 285 432 - -
Vvi8g1680 669 Gene3D - 290 403 IPR023214 -
Vvi8g1680 669 Gene3D - 404 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1680 Vvi-Chr8 22303058 22308153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1680 7 669 Primary Pumps ATPases AT2G41560 73.343 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1680 K01537 - vvi:100241741 1276.15