Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1663 ATGGGGAGAGGCAAGATTGAAATCAAGAAGATTGAAAATATCAACAGCCGTCAAGTCACCTTCTCAAAGCGTCGTGCAGGTTTGCTTAAAAAGGCCAAAGAATTGTCTGTTTTATGTGATGCTGAAGTTGGTGTCATCATCTTCTCCAGCACAGGAAAGCTTTATGAGTTCTCTAGTTCAAGTATGGAGCACACTCTGACGAGATATGGGAGGGGGCTGGACTCGGAACTTCCTTCACTTCATCGGTCCGCAGAGTTTACTATACCGGTTGTTTTTACATTTGAACAGGAGTCCCAGCCTGAGGTCGCCTCTCTCAAAGAAGAAGTTGCAAAACTACAGAAGGGTTACCTGCGAATGATGGGGAAGGAACTGGATGGGTTAAGCTTCAAAGAGTTGCAGCACCTAGAGCATTTATTAAGTGAAGGGATACTATCTGTTAAAGACAAAAAGGAGCAGGTACTGTTGGAGCAGCTCAAGAAGTCCAGGATGCATGAACAAAGAGCTATGATGGAGAATGAGACCTTGAGAAAGCAGGTAAACCCCTAA 546 0.4451 MGRGKIEIKKIENINSRQVTFSKRRAGLLKKAKELSVLCDAEVGVIIFSSTGKLYEFSSSSMEHTLTRYGRGLDSELPSLHRSAEFTIPVVFTFEQESQPEVASLKEEVAKLQKGYLRMMGKELDGLSFKELQHLEHLLSEGILSVKDKKEQVLLEQLKKSRMHEQRAMMENETLRKQVNP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1663 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi8g1663 181 ProSiteProfiles K-box domain profile. 95 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi8g1663 181 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Vvi8g1663 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Vvi8g1663 181 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vvi8g1663 181 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Vvi8g1663 181 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Vvi8g1663 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi8g1663 181 Pfam K-box region 95 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi8g1663 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi8g1663 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi8g1663 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi8g1663 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi8g1663 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1663 Vvi-Chr8 22162819 22164980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1663 1 179 MADS-box Gene Family AT5G13790 55.307 1.03e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi8g1663 K-box 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1663 - - vvi:100252077 298.901