LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g1659	ATGATGGAGGGTGATCACTGTGAAAAAGGGTTGTTGGAATATGTGAGAAAATCAACGCCACCACCTTTCCTACTCAAGACCTATATGCTGGTAGAAGATCCGGCCACCGACGGCGTCATCTCCTGGAACAGCGACGGGACGGCGTTTGTGGTGTGGCAGCCAGCGGAGTTCGCCAGAGATTTGCTTCCCACCCTCTTCAAACACAGCAACTTCTCCAGCTTTGTCCGGCAGCTTAATACTTATGGGTTTCGCAAGGTGGCAACGAGCCGGTGGGAGTTCTGCAACGACATGTTCCGAAGAGGGGAAAGAGAGCTGCTCTGCGAGATCCGGAGACGAAAGGCATGGACCAAGCAGCAGCAGCAGCAGCAGCAACAACAGCAAGCTGTGGGTGGACCAGCTGATCAAAATGGAGTACAAGAGCTGGAAGATGATCAAAGATCATCGTCAACTTCATCTTCGTCAGGATACAGTAGCCTGGTGGATGAAAACAAGCGGCTGAAGAAGGAAAATGGGGTGCTGTGCTCAGAGCTAACAAGCATGAAGAACAAGTGTAAGGAGCTTCTCGATTTAGTGGCAATGCATGCGGGGCCAGAGAAGGAAGAAGAAGATGATGAGAGGCCAAAGCTGTTTGGGGTGAGGTTGGAGGTTCAAGGAGATAGGGAGAGGAAGAGAAAGAGAGCTGAGATTAGTGAAACTGCTAGCATTTTACTATCCCAATCATGCAAATAA	729	0.5021	MMEGDHCEKGLLEYVRKSTPPPFLLKTYMLVEDPATDGVISWNSDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNDMFRRGERELLCEIRRRKAWTKQQQQQQQQQQAVGGPADQNGVQELEDDQRSSSTSSSSGYSSLVDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGPEKEEEDDERPKLFGVRLEVQGDRERKRKRAEISETASILLSQSCK*	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g1659	242	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	17	194	IPR027725	-
	Vvi8g1659	242	SMART	hsfneu3	19	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi8g1659	242	ProSitePatterns	HSF-type DNA-binding domain signature.	62	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi8g1659	242	MobiDBLite	consensus disorder prediction	118	133	-	-
	Vvi8g1659	242	SUPERFAMILY	"Winged helix" DNA-binding domain	19	112	IPR036390	-
	Vvi8g1659	242	MobiDBLite	consensus disorder prediction	118	161	-	-
	Vvi8g1659	242	Gene3D	-	14	113	IPR036388	-
	Vvi8g1659	242	Pfam	HSF-type DNA-binding	23	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi8g1659	242	PRINTS	Heat shock factor (HSF) domain signature	74	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi8g1659	242	PRINTS	Heat shock factor (HSF) domain signature	23	46	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi8g1659	242	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi8g1659	242	MobiDBLite	consensus disorder prediction	142	160	-	-
	Vvi8g1659	242	FunFam	Heat stress transcription factor B-4	15	113	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g1659	Vvi-Chr8	22132437	22133451	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g1659	20	215	HSF	AT2G41690	57.005	2.26e-75	227

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vvi8g1659		HSF_DNA-bind	1.2e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g1659	K09419		-	vvi:100260694	453.751