Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1657 ATGGGAAGGCAACGAGCGCAGTTGAGAGCCATGCTTCGCAAGAATTGGCTTCTGAAAATTCGTCACCCGTTTGTTACTTGTGCCGAGATTTTGCTTCCTACTGTTGTAATGCTGATGTTAATAGCTGTGAGGACACAAGTTGATACAAAAGTCCACTCGGCACAACCATACGTTCGGAAAGGGATGTTTGTGGAAGTGGGCAAAGGTGATGTATCCCCTAGTTTTGGACAAGTATTGGAGTTATTGTTGGCCAAGGGTGAGTATTTGGCTTTTGCACCGGATACAAAGGAGACAAGGATGATGATTAACTTAATGTCGATAAAATTTCCTCTACTAAAGTTAGTCACTAGAGTTTACAAAGATGAACTAGAGCTGGACACCTACATAAGGTCTGATCTTTATGGTACCTGCAATCAAGTCAAGAATTGTTCAAATCCCAAGATCAAAGGAGCAGTAGTATTTCATGATCAAGGTCCACTAGTATTTGATTACAGTATACGCCTCAACCACTCTTGGGCTTTCTCAGGATTTCCTGATGTTAAAACTATCATGGATACAAATGGTCCTTATCTCAATGACTTGGAACTGGGTGTGGATGCTGTCCCTACTCTGCAATACAGCTTCAGTGGATTTTTGACTCTGCAGCAGGTCTTGGATTCTTTCATAATATTTGCGGCCCAGCAAAATGAAGCTAACATGGTCAATGAAAACATTGAATTGCCTTCAAATACTTCCCTGATCAAGCAGTCATGGATGCAATTCATCCCTTCAAACATCAAAATAGTTCCCTTTCCGACTCGTGAATACACTGATGATGAGTTCCAGTCCATTATCAAGAGTGTCATGGGACTACTGTATCTATTGGGATTTCTCTATCCAATCTCACGACTGATCAGCTATTCTGTGTTCGAGAAGGAGCAGAAGATAAAAGAAAGTCTGTACATGATGGGTCTGAAAGATGAGATATTCCATCTCTCTTGGTTTATCACATATGCCTTACAATTTGCCGTTACGTCTGGGATTATTACGGCTTGCACAATGGATACACTTTTCCAGTATAGTGATAAATCATTGGTGTTCATCTACTTCTTTTTATTTGGACTTAGCGCCATCATGCTGTCATTTTTGATCTCTACATTCTTCACACGAGCAAAGACAGCTGTGGCAGTTGGCACCCTTTCTTTTCTTGGAGCCTTCTTTCCTTATTACACTGTCAATGACCAGGCTGTCCCTATGATATTAAAGTTCATTGCATCTTTGCTTTCACCTACGGCCTTTGCACTTGGGTCAATTAACTTTGCTGACTATGAGCGTGCCTATGTTGGGCTTCGTTGGAGCAATGTATGGCGGGCATCATCTGGAGTAAATTTTTTGGCCTGTCTCCTGATGATGTTGCTCGACGCATTGTTGTACTGTGCCATTGGTCTTTACCTGGATAAGGTTCTTCCTAGGGAGAATGGAGTCCGTTCGCCATGGAACTTTCCATTCCTGAAGTGTTCATGGAGAAAGAGAAGTTCCATCAAACATGAAGATTGCAGTTTTGACTTTAAAAATGACAGGAGAAAAGTTAATTTTTGTAGTAATGATATTTCTGGACCTGCTGTGGAAGCAATAAGCTTGGATATGAAGCAACAAGAACTTGATGGCAGATGCATCCAGATTAGAAATCTCCATAAGGTTTATGCTACTAAAAAGGGAAATTGTTGTGCTGTTAACTCATTACGACTCACCTTGTATGAAAATCAGATTCTTGCTCTTCTGGGACACAATGGGGCTGGTAAAAGCACTACAATCTCCATGCTTGTTGGCCTTCTGCCTCCTACTTCTGGGGATGCTTTGGTGTTTGGGAAGAATATCATAACAGAAATGGATGAAATACGGAAGCAATTGGGCGTGTGCCCTCAAAATGATATTCTCTTTCCAGAGTTAACTGTAAAGGAGCATTTGGAAATATTTGCCATTTTGAAAGGTGTAACGGAGAACTTTTTGGAGAGCGCTGTAACTGAGATGGTAGATGAAGTGGGTTTGGCAGATAAAGTTAATACTGTTGTGGGGGCTCTTTCTGGGGGCATGAAAAGAAAATTGTCCCTTGGGATCGCGCTGATAGGAAATAGCAAGGTTATAGTGCTTGATGAACCTACTAGTGGAATGGACCCATATTCAATGCGCTTGACGTGGCAGTTAATCAAAAGAATTAAAAAGGGCAGGATAATATTACTGACCACACACTCCATGGATGAAGCTGATGTACTAGGTGACCGGATAGCAATCATGGCTAATGGGTCTTTGAAATGCTGTGGAAGTTCCCTTTTCTTGAAGCACCAATATGGGGTTGGTTATACTCTTACTTTAGTAAAGTCTGCACCCAGTGCCTCCATAGCTGCTGATATTGTTTATCGCCATGTACCATCAGCAACATGTGTGAGTGAGGTTGGAACAGAGATCTCCTTCAAGCTTCCTCTATCATCTTCATCTTCCTTTGAAAGTATGTTCAGGGAAATTGAAAGCTGTATGAATTCTGTTCATAACTCAGATAGAAGTGGTAATGAGGACAAATACAATCTTGGCATCGAGAGCTATGGTATCTCTGTCACGACGCTGGAGGAGGTGTTCCTGAGAGTTGCAGGATGTGACTTTGATGAAACTGAGTGCAGCAAGCAGGAAAAACTTCATGTTTTACCTGATTCCGTGGTTTCTCAAGCATCTCCTAATCATGCTCCAAAACAAATTTTCCATTCTAAACCTTTGGGAAAATATAAAATTATTGGGGTTGTGTCTACCATAGTGGAGAGGGCTTGTAGTTTAATCTTTGCTGCAGTATTAAGTTTCATAAATTTCTTCAGTGTGCAGTGCTGCAGCTGTTGTTTCATTTCAAAGTCAATATTTTGGGAACATTCCAAAGCATTGCTCATAAAGAGGGCAATAATTGCCCGTAGAGACCGAAAAACAATTGTTTTCCAGCTTCTCATTCCTGCTGTATTCTTGTTGTTTGGTCTTCTTTTGCTCAAGCTTAAGCCACACCCTGACCAGCAGTCCGTGACCTTCACAACTTCACATTTTAATCCTTTGCTACGAGGCGGTGGTGGTGGGGGTCCAATTCCATTTGATCTATCCTGGCCTATTGCAAAAGAGGTTGCATGGTATGTTGAAGGGGGGTGGATTCAAAGGTTTAAACCAACTACTTATAGATTTCCTGACCCAGATAAGGCATTAGCTGATGCCATTGAAGCTGCAGGACCAACTTTGGGGCCTACCCTACTTTCAATGAGTGAATTTTTGATGTCTAGCTTTAATGAATCCTACCAGTCAAGGTATGGGGCAGTTGTGATGGATGATCAGAATAAAGATGGGAGTCTAGGATACACTGTGCTTCACAATGGTTCTTGTCAGCATGCTGCACCAACCTTCATCAATTTAATGAATGCTGCAATTCTTAGGTTTGCTACTCTGAACAAAAATATGACGATTCAAACACGCAATCACCCTCTGCCTATGACAAAAAGCCAGCACTTGCAGCGCCATGATCTGGATGCCTTCTCTGCTGCTGTTATTGTTAATATTGCCCTCTCTTTTGTTCCTGCCTCATTTGCTGTTTCTATTGTAAAGGAACGTGAAGTAAAAGCTAAGCACCAACAGCTAATCAGTGGAGTATCTGTACTTTCGTATTGGGCTTCTACATATTTATGGGACTTCGTCAGCTTCTTATTGCCTTCATCTTTTGCAATAACACTATTTTACATTTTTGGTATGGATCAGTTTATTGGAAAGGGTCGTTTCTTTCCAACCGTCCTCATGTTTTTGGAGTATGGATTAGCAATTGCATCATCAACATACTGTCTTACATTTTCTTTTTCGGACCACACAATGGCACAGAATGTGGTTCTCTTACTCCACTTTTTCACTGGACTTGTTCTTATGGTCATCTCATTCATTATGGGGCTCATACAGACAACTGAAAGTACAAATTCTGTTCTCAAGAACTTCTTCAGACTATCACCAGGGTTTTGCTTTGCTGATGGTCTTGCTTCACTGGCTCTTCTGCGGCAAGGGATGAAAGGTGGATCTAGTGATGGTGTCCTGGACTGGAATGTTACTGGTGCCTCTATTTGTTATTTGGGTGTTGAGAGCATAGGTTTCTTTCTCTTGACGCTTGGGCTTGAATTGCTGCCTCCTCGCAAATTCTCTCTATTCACAATCTTGGAGCCTTGGAGGGCTATTAAAAATAGCTGGCATGGAACTTCTAGTTATTTAGAACCCCTTCTAGAATCAACATCAGAAACTGCTTCTATTGACCTTGATGAAGACATAGATGTACAAACAGAAAGAAATAGAGTACTTTCTGGTTCTGCTGATAATGCAATTATCTACTTGCGGAATCTTCGAAAGGTGTATCCTGGAGGAAAGCATCTTAGTCCAAAAATTGCAGTTCATTCATTGACTTTCTCAGTTCATGAAGGAGAGTGCTTTGGGTTTCTAGGAACAAATGGAGCAGGGAAGACTACAACGCTGTCAATGCTAACTGGGGAAGAATGTCCAACTGATGGAACTGCATTTATCTTTGGCAAAGATGTATGTTCAAATCCCAAGGCTGCCCGTCGGCATATTGGGTACTGCCCACAATTTGATGCTCTGCTAGAATATCTCACCGTGCAAGAGCATCTTGAGCTTTATGCAAGAATAAAAGGAGTTCCAGGTTACAGGATGCAGGATGTTGTTATGGAAAAGTTAGTGGAATTTGATTTGCTGAGGCATGCTAATAAACCATCATTTTCCCTTAGCGGTGGAAACAAGCGCAAATTGTCTGTTGCAATTGCGATGGTTGGAGACCCTCCTATAGTCATCCTAGATGAGCCTTCCACAGGTATGGATCCTATTGCTAAACGATTTATGTGGGAGGTCATATCACGTCTCTCAACCAGACGAGGAAAAACAGCAGTAATTCTAACGACCCACAGCATGGCTGAAGCTCAAGCACTATGCACCCGCATTGGAATAATGGTTGGAGGTCGGCTAAGGTGCATTGGAAGTTCCCAACATTTGAAAACGCGATTTGGAAACCATCTTGAGCTAGAGGTGAAACCTACTGAAGTTAGCCATGTAGACTTGGAAAACCTGTGTCGATTTATTCAAGAAAGGCTCTTTCACATTCCTCATCCGAGGAGCATACTCTCTGACCTTGAAGTTTGCATTGGGGCTGTTGACTCCATAACATCAGAAAATGCATCAGTGGCAGAGATCAGCTTGTCACCTGAAATGATAGTCATGATTGGACGCTGGCTAGGCAATGAAGAAAGAATAAGTACACTTGTATCTTCAACGCCTGTTTCTGATGGGGTTTTTGGTGAACAATTATCAGAGCAGTTGTTTAGAGATGGTGGTATCTCATTGCCCATATTTTCCGAATGGTGGCTAGCTAAAGAAAAATTCTCAGCAATTGATTCGTTTATCCTATCTTCATTTCCTGGTGCAACATTTCATGGGTGCAATGGGTTGAGTGTTAAATATCAGTTGCCATATGGGTACATCTCGCTTGCTGATGTTTTCGGGCACCTAGAACGAAACAGATATCAATTGGGTATAGCCGAATACAGTCTCAGCCAATCTACACTGGAATCCATTTTTAATCATTTTGCAGCAAACTCATGA 5646 0.4173 MGRQRAQLRAMLRKNWLLKIRHPFVTCAEILLPTVVMLMLIAVRTQVDTKVHSAQPYVRKGMFVEVGKGDVSPSFGQVLELLLAKGEYLAFAPDTKETRMMINLMSIKFPLLKLVTRVYKDELELDTYIRSDLYGTCNQVKNCSNPKIKGAVVFHDQGPLVFDYSIRLNHSWAFSGFPDVKTIMDTNGPYLNDLELGVDAVPTLQYSFSGFLTLQQVLDSFIIFAAQQNEANMVNENIELPSNTSLIKQSWMQFIPSNIKIVPFPTREYTDDEFQSIIKSVMGLLYLLGFLYPISRLISYSVFEKEQKIKESLYMMGLKDEIFHLSWFITYALQFAVTSGIITACTMDTLFQYSDKSLVFIYFFLFGLSAIMLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDQAVPMILKFIASLLSPTAFALGSINFADYERAYVGLRWSNVWRASSGVNFLACLLMMLLDALLYCAIGLYLDKVLPRENGVRSPWNFPFLKCSWRKRSSIKHEDCSFDFKNDRRKVNFCSNDISGPAVEAISLDMKQQELDGRCIQIRNLHKVYATKKGNCCAVNSLRLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIITEMDEIRKQLGVCPQNDILFPELTVKEHLEIFAILKGVTENFLESAVTEMVDEVGLADKVNTVVGALSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADVLGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPSASIAADIVYRHVPSATCVSEVGTEISFKLPLSSSSSFESMFREIESCMNSVHNSDRSGNEDKYNLGIESYGISVTTLEEVFLRVAGCDFDETECSKQEKLHVLPDSVVSQASPNHAPKQIFHSKPLGKYKIIGVVSTIVERACSLIFAAVLSFINFFSVQCCSCCFISKSIFWEHSKALLIKRAIIARRDRKTIVFQLLIPAVFLLFGLLLLKLKPHPDQQSVTFTTSHFNPLLRGGGGGGPIPFDLSWPIAKEVAWYVEGGWIQRFKPTTYRFPDPDKALADAIEAAGPTLGPTLLSMSEFLMSSFNESYQSRYGAVVMDDQNKDGSLGYTVLHNGSCQHAAPTFINLMNAAILRFATLNKNMTIQTRNHPLPMTKSQHLQRHDLDAFSAAVIVNIALSFVPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTYLWDFVSFLLPSSFAITLFYIFGMDQFIGKGRFFPTVLMFLEYGLAIASSTYCLTFSFSDHTMAQNVVLLLHFFTGLVLMVISFIMGLIQTTESTNSVLKNFFRLSPGFCFADGLASLALLRQGMKGGSSDGVLDWNVTGASICYLGVESIGFFLLTLGLELLPPRKFSLFTILEPWRAIKNSWHGTSSYLEPLLESTSETASIDLDEDIDVQTERNRVLSGSADNAIIYLRNLRKVYPGGKHLSPKIAVHSLTFSVHEGECFGFLGTNGAGKTTTLSMLTGEECPTDGTAFIFGKDVCSNPKAARRHIGYCPQFDALLEYLTVQEHLELYARIKGVPGYRMQDVVMEKLVEFDLLRHANKPSFSLSGGNKRKLSVAIAMVGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRRGKTAVILTTHSMAEAQALCTRIGIMVGGRLRCIGSSQHLKTRFGNHLELEVKPTEVSHVDLENLCRFIQERLFHIPHPRSILSDLEVCIGAVDSITSENASVAEISLSPEMIVMIGRWLGNEERISTLVSSTPVSDGVFGEQLSEQLFRDGGISLPIFSEWWLAKEKFSAIDSFILSSFPGATFHGCNGLSVKYQLPYGYISLADVFGHLERNRYQLGIAEYSLSQSTLESIFNHFAANS* 1882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1657 1881 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1455 1693 IPR003439 GO:0005524
Vvi8g1657 1881 Gene3D - 1444 1696 IPR027417 -
Vvi8g1657 1881 Gene3D - 539 788 IPR027417 -
Vvi8g1657 1881 Pfam ABC-2 family transporter protein 203 477 IPR013525 GO:0016020|GO:0140359
Vvi8g1657 1881 Pfam ABC-2 family transporter protein 982 1384 IPR013525 GO:0016020|GO:0140359
Vvi8g1657 1881 CDD ABC_subfamily_A 1455 1681 - -
Vvi8g1657 1881 Pfam ABC transporter 1477 1619 IPR003439 GO:0005524
Vvi8g1657 1881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 790 IPR027417 -
Vvi8g1657 1881 CDD ABC_subfamily_A 552 773 - -
Vvi8g1657 1881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1454 1684 IPR027417 -
Vvi8g1657 1881 FunFam ATP-binding cassette sub-family A member 12 544 790 - -
Vvi8g1657 1881 SMART AAA_5 580 762 IPR003593 GO:0016887
Vvi8g1657 1881 SMART AAA_5 1485 1672 IPR003593 GO:0016887
Vvi8g1657 1881 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 552 785 IPR003439 GO:0005524
Vvi8g1657 1881 ProSitePatterns ABC transporters family signature. 687 701 IPR017871 GO:0005524|GO:0016887
Vvi8g1657 1881 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1089 1395 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vvi8g1657 1881 Pfam ABC transporter 572 715 IPR003439 GO:0005524
Vvi8g1657 1881 ProSitePatterns ABC transporters family signature. 1592 1606 IPR017871 GO:0005524|GO:0016887
Vvi8g1657 1881 FunFam ABC transporter A family member 1 1444 1698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1657 Vvi-Chr8 22099914 22128407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1657 552 788 Calmodulin-binding Proteins AT2G36910 26.908 6.04e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1657 K05643 - vvi:100265905 3643.59