Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1644 ATGGCTTCGTCTTCGTCTGAACCTGGTTTGAAACCTGAGAGTGGCGGTGGTAGTGGTAGTGGTGGAGGAGAAACTTCCGAGGCAGCAGTGGCGAGTGATCAACTCTTGCTGTACAGAGGATTGAAAAAAGCTAAAAAAGAGCGAGGGAGTACTGCCAAAGAGAGGATCAGCAAAATGCCTCCTTGTGCCGCCGGGAAACGCAGCTCTATTTATAGAGGAGTTACCAGGCATAGATGGACTGGTCGTTATGAAGCCCATCTTTGGGATAAAAGTACCTGGAACCAAAATCAAAATAAGAAGGGAAAGCAAGGTGCATATGATGATGAGGAGGCTGCAGCTAGAGCGTATGATCTTGCTGCTTTAAAATACTGGGGCCCAGGGACGCTCATTAATTTTCCGGTTACAGATTATGCTAGAGATCTTGAAGAGATGCAAAATGTCTCAAGAGAAGAATACCTTGCATCTCTCCGAAGAAAGAGCAGTGGTTTCTCAAGAGGAATATCTAAATATCGTGGGCTTGCCAGTAATCGGTGGGATCAACCATTTGGACGTATAGCCGGACAAGAATACTTCAATAACATGCACTATGGTATGGGTGATGATGCAGCAGCGGAAAGTGAATTGTTTGGTGGTTTTTGCATGGAAAGAAAAATTGATCTAACAGGTTATATTAAGTGGTGGGGGCCCAACAAAACTCGCCAATCAGATTCCCTCGCAAAATCATCAGAGGAAACAAAGCAAGGCAGTGGGGAAGATATTGGCAGTGAACTTAAAACATTGGAATGGGCAATCCAGCCTACTGAGCCATATCAGATGCCCCGTTTGGGCCTTCCCCATGAAGGGAAAAAGCAAAAAAGTTCCACTGTATCGGCCTTGAGCATTTTGTCACGGTCTGCTGCCTACAAGAGTTTGGAAGAGAAAGCATCCAAAAAGCAAGAAAATAACACTGAGAATGATGAGAATGAGAATAAAAATAAAATCAACAAGATGGATCATGGAAAAGCAGTTGAGAAATCAACAAGCCATGATAGTGGAAGTGAGAGACTTGGAGTAGCATTAGGATTGGGTGGGGAATTCTCTATTCAAAGAAGTGTGTATCCATTGACTCCTTTGTTATCCGCACCACTTCTTACCAACTACAGTAGTGTTGATCCCTTGGCGGACCCTATTTTATGGACGTCTCTTGTTCCTGCTCTGCCGACTGGACTTCCACGTACTGCTGAGGTTACAAAGACTGAGACCAGTTCAACTTATACCTTCTTTCATCAGGAGGAACAATGA 1281 0.4434 MASSSSEPGLKPESGGGSGSGGGETSEAAVASDQLLLYRGLKKAKKERGSTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLASNRWDQPFGRIAGQEYFNNMHYGMGDDAAAESELFGGFCMERKIDLTGYIKWWGPNKTRQSDSLAKSSEETKQGSGEDIGSELKTLEWAIQPTEPYQMPRLGLPHEGKKQKSSTVSALSILSRSAAYKSLEEKASKKQENNTENDENENKNKINKMDHGKAVEKSTSHDSGSERLGVALGLGGEFSIQRSVYPLTPLLSAPLLTNYSSVDPLADPILWTSLVPALPTGLPRTAEVTKTETSSTYTFFHQEEQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1644 426 SMART rav1_2 70 139 IPR001471 GO:0003700|GO:0006355
Vvi8g1644 426 MobiDBLite consensus disorder prediction 305 347 - -
Vvi8g1644 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 317 - -
Vvi8g1644 426 Pfam AP2 domain 70 125 IPR001471 GO:0003700|GO:0006355
Vvi8g1644 426 Gene3D AP2/ERF domain 70 135 IPR036955 GO:0003700|GO:0006355
Vvi8g1644 426 SUPERFAMILY DNA-binding domain 69 134 IPR016177 GO:0003677
Vvi8g1644 426 MobiDBLite consensus disorder prediction 305 344 - -
Vvi8g1644 426 MobiDBLite consensus disorder prediction 237 251 - -
Vvi8g1644 426 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Vvi8g1644 426 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Vvi8g1644 426 ProSiteProfiles AP2/ERF domain profile. 70 133 IPR001471 GO:0003700|GO:0006355
Vvi8g1644 426 Coils Coil 301 324 - -
Vvi8g1644 426 FunFam AP2-like ethylene-responsive transcription factor 69 135 - -
Vvi8g1644 426 MobiDBLite consensus disorder prediction 1 28 - -
Vvi8g1644 426 MobiDBLite consensus disorder prediction 232 254 - -
Vvi8g1644 426 MobiDBLite consensus disorder prediction 44 63 - -
Vvi8g1644 426 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1644 Vvi-Chr8 21957345 21961454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1644 29 409 AP2-EREBP Transcription Factor Family AT2G41710 68.622 2.31e-167 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi8g1644 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1644 K09285 - vvi:100248718 775.393