Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1643 ATGCCTAAGAAGTTTTCTTATCAAGAATTAGCTGCAGCTGCCAAAAATTTTCCTAGTTCAACAATGCTGGGCCAAGGAGGTACTGGACGTGTCTATAAAGGGTTCTTAACTGATTCAGGTCGCATAGAGCGAATTTGGGCAAGCTATGAACATGCTAAAGAAGATTTCATGGCGGAATTGAAGATCATGAGCCAGTTGGAATGCAGGAATGTGGTATCATTGATCGGTTGGTGCATTGATCAAGGGGAACTCCTACTTGTCTATGATTACATGTTTAATGGTAGCCTAGACAAGTATCTCTTTGGGAACAACAGAATGCACCTCTCGTGGAACCTCTTTGGGAACAACAGAATGCACCTCTCGTGGAACCTCAGATACAATGTGGTTCTCAGCTTGGCTTCTGCATTGCTTTATCTTCATGAAGATTCTGGGCAATGCATACCCCACCGGGATGTCAAGTCAGCTAATGTGATGTTGGACTTCAATTTCAATGCTAAACTTGGTGATTTTGGGGCAGCTCAGTTTCTAGATCAGCTCTCAAACAATTAA 549 0.4281 MPKKFSYQELAAAAKNFPSSTMLGQGGTGRVYKGFLTDSGRIERIWASYEHAKEDFMAELKIMSQLECRNVVSLIGWCIDQGELLLVYDYMFNGSLDKYLFGNNRMHLSWNLFGNNRMHLSWNLRYNVVLSLASALLYLHEDSGQCIPHRDVKSANVMLDFNFNAKLGDFGAAQFLDQLSNN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1643 182 Gene3D Transferase(Phosphotransferase) domain 1 91 182 - -
Vvi8g1643 182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Vvi8g1643 182 SMART serkin_6 17 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1643 182 Pfam Protein tyrosine and serine/threonine kinase 21 176 IPR001245 GO:0004672|GO:0006468
Vvi8g1643 182 SUPERFAMILY Protein kinase-like (PK-like) 6 177 IPR011009 -
Vvi8g1643 182 ProSiteProfiles Protein kinase domain profile. 17 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1643 182 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Vvi8g1643 182 PANTHER - 2 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1643 Vvi-Chr8 21955659 21956207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1643 2 178 Receptor kinase-like Gene Family AT5G10530 47.222 4.44e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi8g1643 PK_Tyr_Ser-Thr 2.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1643 - - vvi:104880173 354.755