Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1631 ATGGAGGGGAACGGAGACAACAATAGCCAAGGTCGTCTCCCTGACCGGCTGCAACCTTTTCCGGCTAATGAAGATGGGCTCAACTACGAGCAGATTTTGTTGTATAGCTCCTTTCTAGATCTCCCGGATCTTTCGGAGGAGGCATGGATGGAGAACGATCAATTCCAGGTTGAGCAACGACGCCAACCCGTCCAGCAAGGTGTTAAAGAGATCGAAGAAGAACAAGTGGCCTGGGCGGATGAGTATTTCAGAAGCTGTCCACCAGGGTACAGATTTCTTCCCACCGATGAACAGCTGATTAAGGATTACTTGTTGAGGAAAGTGAACAACGAGCCATTGCCCATCAACCGAATTCGCACCGTTGTTCTCTATGACTACCGTCCTGACGTCCTCGTCGAAAATAATCACAACCGCAATGCGCATAGAGAGAAGCAATGGTATTTCTTTACTTTGCGAGAGCGAAAGCACCCGAATGGGACGAGGCCAAGCCGATCAGTCGCCCATGGCTTGGATGGCTACTGGAAAGCAACTAGCGTTGACAAGGCCATCATTTCAGATGGTCAAGTTATCGGCTTCCGAAAGGCGCTAGATTTCTATGATGGGAACCAATCTAGTGGAATAAAAACCAAATGGAAGATGCATGAATACAGGCTTAATCAGAAGAGTCTTCCTCCCAATAACAGCAATGGATCTGATCCCACGAAGGGAGTAATAAGAGCAATGGATCATGAAGAGAATGCTGAGGTTAAAGTGGTGGCTACTGATAACAGTGGGGTACAGGCCACCACCAATCTACCGGAGTGTAGGATAGAGATGATGTTTATTCTGTGTGTTTAA 837 0.4755 MEGNGDNNSQGRLPDRLQPFPANEDGLNYEQILLYSSFLDLPDLSEEAWMENDQFQVEQRRQPVQQGVKEIEEEQVAWADEYFRSCPPGYRFLPTDEQLIKDYLLRKVNNEPLPINRIRTVVLYDYRPDVLVENNHNRNAHREKQWYFFTLRERKHPNGTRPSRSVAHGLDGYWKATSVDKAIISDGQVIGFRKALDFYDGNQSSGIKTKWKMHEYRLNQKSLPPNNSNGSDPTKGVIRAMDHEENAEVKVVATDNSGVQATTNLPECRIEMMFILCV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1631 278 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g1631 278 Gene3D NAC domain 95 251 IPR036093 GO:0003677|GO:0006355
Vvi8g1631 278 SUPERFAMILY NAC domain 85 223 IPR036093 GO:0003677|GO:0006355
Vvi8g1631 278 ProSiteProfiles NAC domain profile. 86 244 IPR003441 GO:0003677|GO:0006355
Vvi8g1631 278 Pfam No apical meristem (NAM) protein 87 218 IPR003441 GO:0003677|GO:0006355
Vvi8g1631 278 PANTHER NAC TRANSCRIPTION FACTOR 56 86 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1631 Vvi-Chr8 21808491 21810184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1631 85 231 NAC Transcription Factor Family AT1G52890 46.939 3.08e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi8g1631 NAM 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1631 - - vvi:104880174 494.967