Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1630 ATGGAGGGGAACGGAGACAACAATAGCCAAGGTCGTCTCCCTGACCGGCTGCAACCTTTTCCGGCTAATGAAGATGGGCTCAACTACGGGCAGATTTTCTCGTTTCTCCCGGATCTTTCGGGGGAGGCATGGATGGAGAACGATCAATTCCAGGTTGAGCAACGACGCCAACCCGTCCAGCAAGGTGTTAAAGAGATCGAAGAAGAACAAGTGGCCTGGGCGGATGAGTATTTCAGAAGCTGTCCACCAGGGTACAGATTTCTTCCCACCGATGAACAGCTGATTAAGGATTACTTGTTGAGGAAAGTGAACAACGAGCCATTGCCCATCAACCGAATTCGCACCGTTGTTCTCTATGACTACCGTCCTGACGTCCTCGTCGACAATAATCACAACCGCAATGCGCATAGAGAGAAGCAATGGTATTTCTTTACTTTGCGAGAGCGAAAGTACCCGAATGGGACGAGGCCAAGCCGATCAGTCGCCCATGGCTTGGATGGCTACTGGAAGGCAACTGGCGTTGACAAGGCCATCATTTCAGATGGTCAAGTTATCGGCTTCCGAAAGGCCCTAGATTTCTATGATGGCAACCAATCTAGTGGAATAAAAACCAAATGGAAGATGCATGAATACAGGCTTAATCAAAAGAGTCTTCCTCCCAATAACAACAATGGATCTGATCCCACGAAGGAGCAAAATGTTGCCAATTTTTGA 714 0.4846 MEGNGDNNSQGRLPDRLQPFPANEDGLNYGQIFSFLPDLSGEAWMENDQFQVEQRRQPVQQGVKEIEEEQVAWADEYFRSCPPGYRFLPTDEQLIKDYLLRKVNNEPLPINRIRTVVLYDYRPDVLVDNNHNRNAHREKQWYFFTLRERKYPNGTRPSRSVAHGLDGYWKATGVDKAIISDGQVIGFRKALDFYDGNQSSGIKTKWKMHEYRLNQKSLPPNNNNGSDPTKEQNVANF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1630 237 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g1630 237 ProSiteProfiles NAC domain profile. 81 237 IPR003441 GO:0003677|GO:0006355
Vvi8g1630 237 MobiDBLite consensus disorder prediction 215 237 - -
Vvi8g1630 237 SUPERFAMILY NAC domain 80 218 IPR036093 GO:0003677|GO:0006355
Vvi8g1630 237 Gene3D NAC domain 90 235 IPR036093 GO:0003677|GO:0006355
Vvi8g1630 237 Pfam No apical meristem (NAM) protein 82 213 IPR003441 GO:0003677|GO:0006355
Vvi8g1630 237 PANTHER NAC TRANSCRIPTION FACTOR 56 81 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1630 Vvi-Chr8 21802649 21804462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1630 80 226 NAC Transcription Factor Family AT1G52890 48.299 6.54e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi8g1630 NAM 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1630 - - vvi:109123011 488.419