Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1629 ATGATGGCATTTGTATGCCTGTTGTCTCTTGTGCTAATGGGGTCTCTGTCAATTTCACAAGTTGTGGATGCTCAGCTTCATGATCAAGCCACATTGTTAGCAATTAACAAAGAGCTTGGAGTACCTGGGTGGGATGTCAACAACTCAGACTACTGCTCTTGGCGAGGCATTGGTTGTGCAGCGGACGAGTTGATTGTGGAGAGGCTTGATCTTTCTCACCGTGGCCTCCGAGGTAACTTGACTCTCATTTCTGGGCTCAAATCTCTGAAGTCGCTTGACCTTTCTGATAATAATTTCCATGGATCAATTCCTTCAATTTTTGGGAATTTATCCGAGCTTGTGTTTCTGGATTTATCTTGGAATAAGTTTGGCAACTCAATTCCTATAGAGTTGGGTAGCCTCAGGAACCTTAGATCATTGAACCTTTCCAATAACTTGCTCATAGGAGAAATACCTGACGAACTTCAGAGCCTAGAAAAACTGCAGGAGTTTCAAATATCTGGCAATAAATTCAATGGTTCTATCCCAATTTGGGTGGGGAACTTGACCAATCTGAGAGTTTTCACAGCCTATGAGAATGAATTAGCTGGTAAAATTCCAGATAATCTGGGGTCCCATTCAGAACTTCAGCTGTTGAACCTTCACTCCAACCAGCTTGAAGGGGCGATACCAGATACCATTTTTGCTTCAGGGAAGCTGGAAGTTTTGGTTCTGACACAGAATGAATTAACTGGCAATCTACCTGAATTGGTTGGGAAATGCAAGGGTCTTTCAAATATCCGGATTGGTAATAACAATCTTATAGGAAACATTCCAAGGTCAATTGGCAATGTTAGCAGCCTTACTTACTTTGAAGCAGATAATAACAATCTCTCTGGTGAGATTGTCCCAGAGTTTGCTCAGTGCTCTAATCTCACTCTCTTGAATTTAGCCTCAAATGGGTTCACAGGAATGATCCCTCCAGGACTTGGGCAGCTCACAAATTTGCAGGAACTGATTGTCTCCGGTAACAGTCTGTTTGGAGATATTCCGGAATCAATTCTTAGGTGCAAGAATCTGAACAAGCTTGACCTGAGCAATAACAGATTCAATGGCACAATTCCTGGAGATCTCTGCAACACATCGAGACTGCAGTATCTGCTGTTGAGTCAGAATTCAATAAGAGGGGAGATACCTCATGAGATTGGGAATTGTGTAAAACTGCTTGAATTGCAAATGGGCAGTAACTATCTAACTGGAAGTATCCCTCCTGAGATTGGTCACATCAAGAACTTACAGATAGCCTTGAATTTGAGCTTCAATCATCTCCATGGACTGTTGCCCCTTGAATTAGGGAAGCTTGACAAGTTGGTTTCTTTGGATCTATCTAATAATCAGCTCTCTGGGAATATTCCATCTGCACTGAAGGGTATGCTGAGTTTGATAGAGGTTAATTTCTCGAATAATTTATTCACTGGCCCAGTTCCCACCTTTGTACCATTTCAAAAGAGCCCGAATTCCAGCTTTTTGGGGAATAAAGGGCTATGTGGTGAGCCATTGAGTTCTTCCTGTGGGACTAATGGTTCTGATCACGAGAGCTACCATCACAAGGTTTCTTACAGGATTATTTTAGCCGTTATTGGTTCTGGCTTGGCTGTTTTTGTATCAGTGACGGTAGTTGTTTTGCTGTTCATGATGAGGGAGAGACAAGAAAAAGCTGCCAAAGCAGGAGGTGTTGCAGATGATGGAATTAACAACCGGGCAGTGATAATAGCTGGGAATGTGTTTGTTGATAATCTCAGACAGGCAATAGACTTTGATGCTGTGGTTAAGGCTACACTAAAGGATTCAAATAAGCTTAACAGCGGGACTTTTAGCACTGTCTACAAGGCAGTTATGCCTTCTGGGCTGATTCTATCAGTGAAGAGTCTGAGATCAATGGATCGAACCATCATTCATCACCAGAACAAGATGATTAGAGAGCTTGAAAGGCTGAGCAAACTCTGTCATGATAACCTAATGAGACCTATTGGATTTGTAATCTATGAAGATGTTGCTCTCTTGTTACATAATTACTTACCCAATGGGACATTAGCTCAGTTTCTTCATGATCCAACAAAGATATCAGAATATGAACCTGACTGGCCTACAAGACTCAACATTGCTACTGGAGTAGCAGAAGGGTTGGCTTTCCTTCATCATGTGGCAATTATTCATCTTGACATCTCTTCGGGAAACATACTTCTAGATGCTGATTTCAAGCCTTTGGTGGGAGAGATTGAGATATCAAAACTCCTAGATCCATCCAAAGGCACTGCAAGTATCAGTGCAGTTGCAGGTTCATTTGGTTACATTCCTCCAGAATATGCATATACTATGCAAGTTACAGCACCTGGAAACGTATATAGCTATGGGGTTGTTCTGCTTGAGATCCTTACTACCCGACTACCGGTTGATGAGGCTTTTGGTGAAGGAATAGATTTGGTGAAGTGGGTTCACACTGCTCCAGCAAGAGGGGAAACACCAGAGCAGATACTGGATGCAAGGCTTAGCACGGTCTCATTCGCTTGGAGGAAAGAAATGCTTTCTGCCCTTAAGGTTGCCTTACTCTGTACCGACAACACTCCTGCCAAACGGCCTAAAATGAAAAAGGTGGTGGAAATGCTCCAAGAAATAAAGCAAAACTGA 2667 0.4248 MMAFVCLLSLVLMGSLSISQVVDAQLHDQATLLAINKELGVPGWDVNNSDYCSWRGIGCAADELIVERLDLSHRGLRGNLTLISGLKSLKSLDLSDNNFHGSIPSIFGNLSELVFLDLSWNKFGNSIPIELGSLRNLRSLNLSNNLLIGEIPDELQSLEKLQEFQISGNKFNGSIPIWVGNLTNLRVFTAYENELAGKIPDNLGSHSELQLLNLHSNQLEGAIPDTIFASGKLEVLVLTQNELTGNLPELVGKCKGLSNIRIGNNNLIGNIPRSIGNVSSLTYFEADNNNLSGEIVPEFAQCSNLTLLNLASNGFTGMIPPGLGQLTNLQELIVSGNSLFGDIPESILRCKNLNKLDLSNNRFNGTIPGDLCNTSRLQYLLLSQNSIRGEIPHEIGNCVKLLELQMGSNYLTGSIPPEIGHIKNLQIALNLSFNHLHGLLPLELGKLDKLVSLDLSNNQLSGNIPSALKGMLSLIEVNFSNNLFTGPVPTFVPFQKSPNSSFLGNKGLCGEPLSSSCGTNGSDHESYHHKVSYRIILAVIGSGLAVFVSVTVVVLLFMMRERQEKAAKAGGVADDGINNRAVIIAGNVFVDNLRQAIDFDAVVKATLKDSNKLNSGTFSTVYKAVMPSGLILSVKSLRSMDRTIIHHQNKMIRELERLSKLCHDNLMRPIGFVIYEDVALLLHNYLPNGTLAQFLHDPTKISEYEPDWPTRLNIATGVAEGLAFLHHVAIIHLDISSGNILLDADFKPLVGEIEISKLLDPSKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEAFGEGIDLVKWVHTAPARGETPEQILDARLSTVSFAWRKEMLSALKVALLCTDNTPAKRPKMKKVVEMLQEIKQN* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1629 888 ProSitePatterns Tyrosine protein kinases specific active-site signature. 730 742 IPR008266 GO:0004672|GO:0006468
Vvi8g1629 888 Pfam Leucine Rich Repeat 88 110 IPR001611 GO:0005515
Vvi8g1629 888 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515
Vvi8g1629 888 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515
Vvi8g1629 888 Gene3D Ribonuclease Inhibitor 272 517 IPR032675 -
Vvi8g1629 888 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 577 685 - -
Vvi8g1629 888 PRINTS Leucine-rich repeat signature 353 366 - -
Vvi8g1629 888 PRINTS Leucine-rich repeat signature 447 460 - -
Vvi8g1629 888 FunFam Nuclear pore complex protein NUP107 24 177 - -
Vvi8g1629 888 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 226 521 - -
Vvi8g1629 888 Gene3D Ribonuclease Inhibitor 25 173 IPR032675 -
Vvi8g1629 888 Gene3D Phosphorylase Kinase; domain 1 578 685 - -
Vvi8g1629 888 SUPERFAMILY RNI-like 68 388 - -
Vvi8g1629 888 SMART LRR_typ_2 207 230 IPR003591 -
Vvi8g1629 888 SMART LRR_typ_2 86 109 IPR003591 -
Vvi8g1629 888 SMART LRR_typ_2 182 206 IPR003591 -
Vvi8g1629 888 SMART LRR_typ_2 447 470 IPR003591 -
Vvi8g1629 888 SMART LRR_typ_2 326 350 IPR003591 -
Vvi8g1629 888 SMART LRR_typ_2 110 133 IPR003591 -
Vvi8g1629 888 SMART LRR_typ_2 134 157 IPR003591 -
Vvi8g1629 888 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 686 888 - -
Vvi8g1629 888 Pfam Protein kinase domain 609 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1629 888 Pfam Leucine rich repeat 327 387 IPR001611 GO:0005515
Vvi8g1629 888 SUPERFAMILY L domain-like 351 512 - -
Vvi8g1629 888 Gene3D Ribonuclease Inhibitor 174 271 IPR032675 -
Vvi8g1629 888 SUPERFAMILY Protein kinase-like (PK-like) 607 885 IPR011009 -
Vvi8g1629 888 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515
Vvi8g1629 888 ProSiteProfiles Protein kinase domain profile. 607 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1629 888 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 66 185 - -
Vvi8g1629 888 Gene3D Transferase(Phosphotransferase) domain 1 686 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1629 Vvi-Chr8 21784498 21787277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1629 2 887 Receptor kinase-like Gene Family AT2G41820 74.775 0.0 1330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi8g1629 Pkinase 7.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1629 - - vvi:100258928 1684.08