Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1626 ATGGATGCCATAGCCTTGCTGCATCCCTCACAAACTTTGAAGAAACCAGTCCTCCTCTCGGATCCATTGCTTGCCCTTTCCTCCTTGCTTCAAAGCATGGCCGAATCATTTGCCTTCGACTTAGCAAACAAAGTTCTGGGAAAAATAGCTTCGCTTGCTCTCCAAGAAGTTGCCCTTGCATGGGGTGTCACGGCTGACCTTGATGGTCTCAAGGATACACTCTCTGTCATTCAAGCGGTGATCTCAGATGCTGAGGAGCAGCAATCTAACAGCCGCCAGATCGCCGATTGGCTTCGAAAGCTCAAAAAAGCTCTTTACGAGGCTGAAGATGTGCTTGATGACTTTGAGTATGAGGCTTTACGCCGGAAAGTTGCAAAAGCTGGGAGCATCACAAAACAGGTACACAGTTTCTTTTCAACTTCAAATCCACTTCCATTTAGCTTTAAAATGGGTCGCAAAATGAAGAACTTGAAAGAGAGGTTGGATAAGATTGCAGCTGATAGGTCTAAATTTAATCTCACTGAGAGAGCAGTTGTAGTGGACACAACGCATGTAGTGCATAGGAAGAGGGAGATGACCCACTCCTACGTGGATGTTTCCAATATTATTGGAAGAGAGCAGGACAAAGAAAATATAGTCAGCATTTTGATGAAATCAAGTAGCGATGAGCAGGAGAATGTTTCTGTTATTCCCATCATTGGGATCGGTGGTATGGGAAAGACGGCTCTTGCTAAATTGGTGTATAATGATGGAAGGGTGGTTAAACATTTTGATAAAAGAATGTGGGTTTGTGTATCTGATGAGGATAATGAAATTGAGACGCTGACAAAGAAGATCCTTATTTCTGCAACCATGGGAGGCACTGGTACCTTGTCTATGGATCAATTTCAAAATCTCAGATTTTCGCTTGCTGAATTTTCCATGGATGAATTGCAAACTCAACTAAGAAATGCATTGGATGATAAGAGATATTTGCTTGTTCTGGATGATGTTTGGAATAGCGATCGTGAGAAATGGCTCAAGTTAAAAGAGCTGCTCATGGGTAGTGCAGGTGGCAGTAAAATCGTGGTGACTACTCGCAAAAAGTCAGTGGCTTCAGTCTTGGGTACTTTTCCGGCACAAGAATTAAAGGGTCTTCCTGATGAGGACTGTCAGTCTTTGTTTCTCAAATGTGCATTTAAAGATGGACAAGGTAAGCAGTATCCCAATCTCGTAAAAATTGGGAATCAGATTGTTAAGAAATGTGGAGGGGTTCCTCTTGCTGTAAGAAGTTTAGGGGGCTTGCTTTACTCAAAGCTAGAGGAACGTGATTGGGAATTGGTGAGAGATAACGAAATATGGACATTAGAGGAGAAGGACGATGGAATCTTGCCTGCGTTAAAGTTAAGCTATGATGAGCTTCCATCTCACTTAAAACCGTGCTTTGTTTTTTGTTCCATGTTTCCAAAAGATTACGAGTTGAACAACGTTGAGTTGATTCAACTTTGGATGGCGCGAGGTTTGATTCAGCCATCTAGCCATAACCAAGAGTTGGAAGATATTGGCAACCAATGTATTATTGAATTGTGTTCCAGATCTTTCTTCCAAGATGTTGAAGATTATAAAGTTTCTGTTTTTTTTAAAATGCACGATCTAGTGCATGATCTTGCACTGTCTATAAAAAAAATTGAGTCCAAAGAGGTTGAAGATGCGTCCATTACTGACAATGTTCCAGAACAAATTTTAGCACTTCTCCAGGAGAAAAACAATATTAGAACCATTTGGTTTCCATATAGTGAGATAAATGCGACGGCTGAATATGTGGGTACTTGCAGTTCAAGATTCAAATACATGCGAGTTTTAGATTTAAGAGGGACTGATTTTGAGGAGTTGCCAAGTTCCATTGGTAATATGAAACATTTGAGATATTTGGACATTTGTGGGAATAAGAGGGTCAAGAAACTCCCAGCTTCCATTTGCAAGTTGTACCTTTTGCTGACATTGTCGTTCAAAGAATGCACTGAACTGGAGGAATTGCCAAGAGATATGGGTAACTTTATCAGTCTGAGGTTTTTGGCAATAACCACGAAACAAAGAGCTTGGCCAAGGAAAGGGAATGGGTTGGCTTGCTTGATTTCTCTTCGTTGGTTGTTGATTGCAGAATGTAACCATGTGGAATTTATGTTTGAAGGATTGCAAAACCTCACTGCTCTTAGAAGCTTGGAGATTAGAAGGTGTCCAAGTCTGGTGTCTTTGCCACCAAGTGTGAAACACCTACCTGCATTAGAGACTTTGATGATTTTTAATTGTGAAATGTTTAATTTTATGGATGAGGATGGGGATGAAGAGAATGACATTCAAGGCATCAGTTGTAGACTCCGCTCATTGATGGTTGTGGATTTACCAAAATTGGAAGCTTTGCCCGGGTGGCTCATCCAAGGGCTTGCTGCTAGCACCCTGCATTACTTACTTATTAGGAGATGTCACAAATTCAAAGCATTGCCAGAGTCATTGGAGAATCTCACATCACTCCAGGAACTTCGAATTGACGATTGCCCTCAACTTTCAACTCTGTCAGGAGGGATGCACCGCCTCACTACACTAAAAGTTCTAAGTATTCGTGATTGTCCCGAGTTGAGTAAAAGATGCAAACCAGAAATAGGAGAGGATTGGCACAAGATTGCACATGTCCCAGAGATATATATTGATGGAGAAGCTATTAAATCAACAACCAATAATTAG 2721 0.4123 MDAIALLHPSQTLKKPVLLSDPLLALSSLLQSMAESFAFDLANKVLGKIASLALQEVALAWGVTADLDGLKDTLSVIQAVISDAEEQQSNSRQIADWLRKLKKALYEAEDVLDDFEYEALRRKVAKAGSITKQVHSFFSTSNPLPFSFKMGRKMKNLKERLDKIAADRSKFNLTERAVVVDTTHVVHRKREMTHSYVDVSNIIGREQDKENIVSILMKSSSDEQENVSVIPIIGIGGMGKTALAKLVYNDGRVVKHFDKRMWVCVSDEDNEIETLTKKILISATMGGTGTLSMDQFQNLRFSLAEFSMDELQTQLRNALDDKRYLLVLDDVWNSDREKWLKLKELLMGSAGGSKIVVTTRKKSVASVLGTFPAQELKGLPDEDCQSLFLKCAFKDGQGKQYPNLVKIGNQIVKKCGGVPLAVRSLGGLLYSKLEERDWELVRDNEIWTLEEKDDGILPALKLSYDELPSHLKPCFVFCSMFPKDYELNNVELIQLWMARGLIQPSSHNQELEDIGNQCIIELCSRSFFQDVEDYKVSVFFKMHDLVHDLALSIKKIESKEVEDASITDNVPEQILALLQEKNNIRTIWFPYSEINATAEYVGTCSSRFKYMRVLDLRGTDFEELPSSIGNMKHLRYLDICGNKRVKKLPASICKLYLLLTLSFKECTELEELPRDMGNFISLRFLAITTKQRAWPRKGNGLACLISLRWLLIAECNHVEFMFEGLQNLTALRSLEIRRCPSLVSLPPSVKHLPALETLMIFNCEMFNFMDEDGDEENDIQGISCRLRSLMVVDLPKLEALPGWLIQGLAASTLHYLLIRRCHKFKALPESLENLTSLQELRIDDCPQLSTLSGGMHRLTTLKVLSIRDCPELSKRCKPEIGEDWHKIAHVPEIYIDGEAIKSTTNN* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1626 906 PRINTS Disease resistance protein signature 415 429 - -
Vvi8g1626 906 PRINTS Disease resistance protein signature 229 244 - -
Vvi8g1626 906 PRINTS Disease resistance protein signature 726 742 - -
Vvi8g1626 906 PRINTS Disease resistance protein signature 318 332 - -
Vvi8g1626 906 Pfam NB-ARC domain 205 465 IPR002182 GO:0043531
Vvi8g1626 906 FunFam Probable disease resistance protein At1g63360 464 552 - -
Vvi8g1626 906 Coils Coil 67 87 - -
Vvi8g1626 906 SUPERFAMILY L domain-like 541 873 - -
Vvi8g1626 906 Gene3D - 43 164 - -
Vvi8g1626 906 Pfam Rx N-terminal domain 44 131 IPR041118 -
Vvi8g1626 906 Gene3D - 469 551 IPR036388 -
Vvi8g1626 906 PANTHER DISEASE RESISTANCE PROTEIN RP 70 869 IPR044974 GO:0006952
Vvi8g1626 906 Coils Coil 98 118 - -
Vvi8g1626 906 Gene3D - 183 370 IPR027417 -
Vvi8g1626 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 478 IPR027417 -
Vvi8g1626 906 Gene3D - 379 468 IPR042197 -
Vvi8g1626 906 CDD RX-CC_like 45 165 IPR038005 -
Vvi8g1626 906 Gene3D Ribonuclease Inhibitor 565 904 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1626 Vvi-Chr8 21772550 21775270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1626 226 874 WRKY Transcription Factor Family AT5G45050 22.003 3.55e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1626 - - vvi:100246945 1784.62