Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1624 ATGTCTCTACGAAAAGCCCCACTTCCTAGGCTTCTCCTCAATAATGTGTCTTGCATGAGGAACGGGCACCAAATCCTGCGGCATACGAATGTCTCTCTTCATGATGGTAGTGCACTGGTGCTGTCTGGTGCGAATGGTTCTGGAAAAACTACGATGTTGCGCATGTTAGCAGGATTCAATCGACCATCTGCTGGACAGGTCCTCTGGAATGGTCACGATGTGACAAAAGCAGGGGTTTTTGATCAGTACAAGCTTCAGCTTAACTGGCTCTCCCTCAAAGATGCCATTAATGATAAATTTACAGTCTTTGAGAATGTGGTGTGGTTCGAACTACTAGATAAAAAAGAAGGAAGGTCTATGCCTGCATTGGAGCTGATGGGGCTTGGAAGATTGGCGAATGAGAAGCCACGAAGGCTGTCGATGGGTCAGCGAAAAAGGGTTCAGCTTGCTAGGTTGCTGGCACTGGATAGGCCAATTTGGTTGCTGGATGAGCCATCTGTGGCACTGGATGAAGACGGGTTGAGATTGCTGGAGTATATAATAGCGGATCATAGGAAGAAGGGGGGCATTGTGATTGTGGCTACTCATCAGCCAATTCAGATAGAGGATGCCATGTTTTTAAGGTTGCCACCAAGGTTCCCAAGAGGGATGTCTCATACTGATATGCTAGATCGAGCTGATTGGATCGTTTAA 693 0.4704 MSLRKAPLPRLLLNNVSCMRNGHQILRHTNVSLHDGSALVLSGANGSGKTTMLRMLAGFNRPSAGQVLWNGHDVTKAGVFDQYKLQLNWLSLKDAINDKFTVFENVVWFELLDKKEGRSMPALELMGLGRLANEKPRRLSMGQRKRVQLARLLALDRPIWLLDEPSVALDEDGLRLLEYIIADHRKKGGIVIVATHQPIQIEDAMFLRLPPRFPRGMSHTDMLDRADWIV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1624 230 SMART AAA_5 35 223 IPR003593 GO:0016887
Vvi8g1624 230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
Vvi8g1624 230 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 7 222 IPR005895 GO:0017004|GO:0022857
Vvi8g1624 230 Pfam ABC transporter 27 166 IPR003439 GO:0005524
Vvi8g1624 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 202 IPR027417 -
Vvi8g1624 230 Gene3D - 5 207 IPR027417 -
Vvi8g1624 230 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 208 IPR005895 GO:0017004|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1624 Vvi-Chr8 21762032 21762724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1624 24 204 Calmodulin-binding Proteins AT2G36910 26.178 2.18e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1624 - - vvi:100267504 464.151