Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1620 ATGTTGTACATCATCCACAACCATCAAAGACCTAGGGTTTCTATCTCTCTTCGGCTTCACACTCCTCTCTTTCTCAACTCATATCTCTCGATTCCTGCAATCATGGCCGAGAGAGGTGGTGGTGGTGAACGTGGTGGTTTTGGACGTGGTTTCGGCCGTGGTGGCCGCGGAGATCGTGGGAGAGGTGGAAGGCGCCGCTCTGCCGGACGCCGAGAGGAGGAGGAAAAGTGGGTTCCAGTTACCAAACTCGGTCGCCTGGTGAAGGACGGTAAGATCCGAACCGTGGAGGAGATCTACCTCCACTCTCTTCCAATCAAAGAGCACCAAATCATCGACACTCTTGTCGGCCCAAGCCTCAAGGACGAGGTCATGAAGATCATGCCGGTTCAGAAGCAGACTCGGGCTGGTCAGAGGACCCGGTTCAAGGCATTTGTTGTCGTCGGCGATGGCAACGGCCACGTGGGTCTCGGAGTCAAGTGCAGCAAAGAGGTGGCCACTGCGATTCGTGGTGCGATCATTTTGGCCAAGCTGTCGGTGATTCCGGTAAGGAGAGGGTACTGGGGGAACAAGATTGGAAAGCCTCATACTGTGCCGTGCAAGGTTACCGGGAAGTGTGGTTCGGTTACGGTGCGGATGGTGCCGGCTCCTCGTGGTGCTGGTATTGTGGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTCTGGAGGGAGACTCGGTACACAAAATCCCCATTCCAAGAGCACACAGATCTTTTGGCAAAGCCCACCAAGGCGATTTATCAGGATGATGTTGAAAGGGTTGAGGCTTGA 924 0.539 MLYIIHNHQRPRVSISLRLHTPLFLNSYLSIPAIMAERGGGGERGGFGRGFGRGGRGDRGRGGRRRSAGRREEEEKWVPVTKLGRLVKDGKIRTVEEIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYAYLTPDFWRETRYTKSPFQEHTDLLAKPTKAIYQDDVERVEA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1620 307 Pfam Ribosomal protein S5, C-terminal domain 203 274 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vvi8g1620 307 SUPERFAMILY Ribosomal protein S5 domain 2-like 195 275 IPR020568 -
Vvi8g1620 307 Gene3D - 182 274 IPR014721 -
Vvi8g1620 307 Pfam Ribosomal protein S5, N-terminal domain 119 183 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi8g1620 307 ProSitePatterns Ribosomal protein S5 signature. 136 168 IPR018192 -
Vvi8g1620 307 Gene3D - 76 181 - -
Vvi8g1620 307 ProSiteProfiles S5 double stranded RNA-binding domain profile. 119 182 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi8g1620 307 NCBIfam 30S ribosomal protein S5 72 279 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vvi8g1620 307 FunFam 40S ribosomal protein S2 182 275 - -
Vvi8g1620 307 MobiDBLite consensus disorder prediction 42 74 - -
Vvi8g1620 307 FunFam 40S ribosomal protein S2 76 181 - -
Vvi8g1620 307 SUPERFAMILY dsRNA-binding domain-like 115 184 - -
Vvi8g1620 307 PANTHER RIBOSOMAL S SUBUNIT 66 266 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi8g1620 307 MobiDBLite consensus disorder prediction 54 74 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1620 73 293 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 88.688 4.47e-148 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1620 K02981 - vvi:100260573 488.034