Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g1619 | ATGGGCACGCCTGAATTCCCAGATCTAGGAAAGCACTGCACCGTCGACGATTGCAAGCAAATTGATTTCTTACCCTTTACCTGCGATCGCTGCCACCAGATATTCTGTTTGGAGCATCGAAGCTACATTAAACATCACTGTCCAACTGCTGATAGAAAAGACGTCACTGTTGTCATCTGCCCACTCTGTGCTAAAGGAGTTCGACTTATTCCAGATGAAGATCCAAACGTCACATGGGAGACACATGTTAACACTGAGTGTGATCCATCAAACTATGAGAAAGCCACAAAAAAGAAAAAATGCCCTGTCTCTGGCTGCAGGGAGATCCTAACATTCTCTAATACACTTAAGTGCCGAGACTGCACAATAGACCACTGCTTGAAGCACCGGTTTGGACCTGATCACAAATGCCCTGGACCCAAGAAGCCCGAGGCTGCATTCCCATTTATAGGTCTTTTAAATAGGAGTAAAAAGGAAGACTCAAAACCCAGCCGTGCTCCAACATCTTCATCTAAATGGGCTACAAGCTTTCTCAATGTGGCTTCAAATGTTCGAGCCTCTGCTGAGGCAGGAATGACAAAGTTGACTAGCGAATTCAGCCAAGCATGGCAGACGACAAGGGATGGAGTGGGACAGAGCAGCGGCAGCAGCAGTGGGAGCAGAGTCGGGCAAGTGGAGGAGTGCCCCCAGTGTCATGCAAAGTTTTCTTCAGTTACATCTCTGGTTGAGCATGTGGAGAAGGTCCATGAAAAAAATTCCAACCGAGCTGCTGTAAGGAAGGTGACAATTGATGTATGCCCAAAATGTAGTAGAGGATTTCGTGATCCAGTGTCTCTTGTTGAACATGTGGAGAGGGACCATGGTGGTACTTCAAAAGCTTAG | 882 | 0.4694 | MGTPEFPDLGKHCTVDDCKQIDFLPFTCDRCHQIFCLEHRSYIKHHCPTADRKDVTVVICPLCAKGVRLIPDEDPNVTWETHVNTECDPSNYEKATKKKKCPVSGCREILTFSNTLKCRDCTIDHCLKHRFGPDHKCPGPKKPEAAFPFIGLLNRSKKEDSKPSRAPTSSSKWATSFLNVASNVRASAEAGMTKLTSEFSQAWQTTRDGVGQSSGSSSGSRVGQVEECPQCHAKFSSVTSLVEHVEKVHEKNSNRAAVRKVTIDVCPKCSRGFRDPVSLVEHVERDHGGTSKA* | 294 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g1619 | 293 | Gene3D | - | 2 | 58 | IPR035896 | - | |
Vvi8g1619 | 293 | ProSiteProfiles | Zinc finger AN1-type profile. | 95 | 145 | IPR000058 | GO:0008270 | |
Vvi8g1619 | 293 | Pfam | AN1-like Zinc finger | 101 | 141 | IPR000058 | GO:0008270 | |
Vvi8g1619 | 293 | Pfam | AN1-like Zinc finger | 13 | 50 | IPR000058 | GO:0008270 | |
Vvi8g1619 | 293 | SUPERFAMILY | AN1-like Zinc finger | 6 | 50 | IPR035896 | - | |
Vvi8g1619 | 293 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 226 | 254 | IPR013087 | - | |
Vvi8g1619 | 293 | SUPERFAMILY | AN1-like Zinc finger | 93 | 146 | IPR035896 | - | |
Vvi8g1619 | 293 | Gene3D | Classic Zinc Finger | 198 | 292 | - | - | |
Vvi8g1619 | 293 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 228 | 249 | IPR013087 | - | |
Vvi8g1619 | 293 | SMART | c2h2final6 | 264 | 287 | IPR013087 | - | |
Vvi8g1619 | 293 | SMART | c2h2final6 | 226 | 249 | IPR013087 | - | |
Vvi8g1619 | 293 | SMART | AN1_Zf_4 | 13 | 52 | IPR000058 | GO:0008270 | |
Vvi8g1619 | 293 | SMART | AN1_Zf_4 | 101 | 142 | IPR000058 | GO:0008270 | |
Vvi8g1619 | 293 | ProSiteProfiles | Zinc finger AN1-type profile. | 7 | 55 | IPR000058 | GO:0008270 | |
Vvi8g1619 | 293 | FunFam | AN1-type zinc finger protein 2B isoform X1 | 3 | 64 | - | - | |
Vvi8g1619 | 293 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 266 | 287 | IPR013087 | - | |
Vvi8g1619 | 293 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 5 | 254 | - | - | |
Vvi8g1619 | 293 | Gene3D | - | 80 | 148 | IPR035896 | - | |
Vvi8g1619 | 293 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 264 | 292 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi8g1619 | Vvi-Chr8 | 21708714 | 21711026 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi8g1619 | 1 | 293 | C2H2 Transcription Factor Family | AT2G41835 | 64.646 | 1.79e-130 | 370 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vvi8g1619 | zf-AN1 | 2.1e-07 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g1619 | - | - | vvi:100255506 | 607.06 |