Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1619 ATGGGCACGCCTGAATTCCCAGATCTAGGAAAGCACTGCACCGTCGACGATTGCAAGCAAATTGATTTCTTACCCTTTACCTGCGATCGCTGCCACCAGATATTCTGTTTGGAGCATCGAAGCTACATTAAACATCACTGTCCAACTGCTGATAGAAAAGACGTCACTGTTGTCATCTGCCCACTCTGTGCTAAAGGAGTTCGACTTATTCCAGATGAAGATCCAAACGTCACATGGGAGACACATGTTAACACTGAGTGTGATCCATCAAACTATGAGAAAGCCACAAAAAAGAAAAAATGCCCTGTCTCTGGCTGCAGGGAGATCCTAACATTCTCTAATACACTTAAGTGCCGAGACTGCACAATAGACCACTGCTTGAAGCACCGGTTTGGACCTGATCACAAATGCCCTGGACCCAAGAAGCCCGAGGCTGCATTCCCATTTATAGGTCTTTTAAATAGGAGTAAAAAGGAAGACTCAAAACCCAGCCGTGCTCCAACATCTTCATCTAAATGGGCTACAAGCTTTCTCAATGTGGCTTCAAATGTTCGAGCCTCTGCTGAGGCAGGAATGACAAAGTTGACTAGCGAATTCAGCCAAGCATGGCAGACGACAAGGGATGGAGTGGGACAGAGCAGCGGCAGCAGCAGTGGGAGCAGAGTCGGGCAAGTGGAGGAGTGCCCCCAGTGTCATGCAAAGTTTTCTTCAGTTACATCTCTGGTTGAGCATGTGGAGAAGGTCCATGAAAAAAATTCCAACCGAGCTGCTGTAAGGAAGGTGACAATTGATGTATGCCCAAAATGTAGTAGAGGATTTCGTGATCCAGTGTCTCTTGTTGAACATGTGGAGAGGGACCATGGTGGTACTTCAAAAGCTTAG 882 0.4694 MGTPEFPDLGKHCTVDDCKQIDFLPFTCDRCHQIFCLEHRSYIKHHCPTADRKDVTVVICPLCAKGVRLIPDEDPNVTWETHVNTECDPSNYEKATKKKKCPVSGCREILTFSNTLKCRDCTIDHCLKHRFGPDHKCPGPKKPEAAFPFIGLLNRSKKEDSKPSRAPTSSSKWATSFLNVASNVRASAEAGMTKLTSEFSQAWQTTRDGVGQSSGSSSGSRVGQVEECPQCHAKFSSVTSLVEHVEKVHEKNSNRAAVRKVTIDVCPKCSRGFRDPVSLVEHVERDHGGTSKA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1619 293 Gene3D - 2 58 IPR035896 -
Vvi8g1619 293 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vvi8g1619 293 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Vvi8g1619 293 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Vvi8g1619 293 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Vvi8g1619 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 254 IPR013087 -
Vvi8g1619 293 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Vvi8g1619 293 Gene3D Classic Zinc Finger 198 292 - -
Vvi8g1619 293 ProSitePatterns Zinc finger C2H2 type domain signature. 228 249 IPR013087 -
Vvi8g1619 293 SMART c2h2final6 264 287 IPR013087 -
Vvi8g1619 293 SMART c2h2final6 226 249 IPR013087 -
Vvi8g1619 293 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vvi8g1619 293 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Vvi8g1619 293 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Vvi8g1619 293 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Vvi8g1619 293 ProSitePatterns Zinc finger C2H2 type domain signature. 266 287 IPR013087 -
Vvi8g1619 293 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 254 - -
Vvi8g1619 293 Gene3D - 80 148 IPR035896 -
Vvi8g1619 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 292 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1619 Vvi-Chr8 21708714 21711026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1619 1 293 C2H2 Transcription Factor Family AT2G41835 64.646 1.79e-130 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g1619 zf-AN1 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1619 - - vvi:100255506 607.06