Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1613 ATGGGTAATTGCTGCGTGACCCCGGTTCCGTCTGAGAAGAAAAAGGGGAAAAAGAAGCAGAACCCGTTTTCTCTCGATTATGCGGCGAATCAGGGAAATGGTGGGAGCAAGCTCTCCGTGCTGAAAGACCCGACGGGTCGCGAAATCGAGCTCAGATATGAACTGGGTCGCGAGCTCGGTCGCGGAGAATTTGGAATTACGCATCTGTGCACTGATAAATCGACCGGCGATGTGTATGCTTGTAAATCGATATCAAAGAAAAAGCTTAGGACGGCTGTAGATATCGATGACGTGCGAAGAGAAGTTGAGATCATGAAGCATTTGCCTAAGCACCCCAATATTGTGACCTTAAAGGACACTTATGAGGACGACAATGCGGTTCATTTGGTGATGGAGTTGTGTGAGGGCGGTGAATTGTTCGATCGGATTGTTGCGCGTGGCCACTACACCGAAAGGGCCGCAGCTGCGGTCACCAAGACCATTGTCGAAGTCGTCCAGATGTGCCACAAGCATGGGGTTATGCATCGGGATCTCAAGCCAGAGAACTTTCTGTTTGCCAACAAGAAGGAAACAGCACCCTTAAAGGCAATTGATTTTGGACTATCTGTGTTCTTTAAACCTGGCGAGAGATTTACTGAGATAGTTGGAAGTCCTTACTACATGGCTCCCGAGGTCCTAAAACGGAATTATGGCCCAGAAGTTGATGTGTGGAGTGCTGGAGTTATCCTCTACATCTTACTTTGTGGTGTTCCACCTTTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATTATCCGGTCTGTTTTAGATTTCAAGAGGGACCCCTGGCCTAAAGTTTCTGAAAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGATCCAAAGAGGCGACTTTCAGCTCAGGAAGTACTAGATCATCCTTGGTTACAAAACGCCAAGAAAGCTCCAAATGTTTCTTTAGGAGAAACTGTGAGGGCAAGGCTCAAGCAATTCTCAATGATGAACAAGCTCAAGAAAAGAGCTCTAAGGGTGATTGCAGAGCACTTGTCAGTGGAGGAAGTGGCTGGGATAAAGGAGGGATTCCAACTGATGGATACTGGCAACAAAGGCAAGATCAACATGGATGAGCTAAGGGTCGGATTGCAAAAGCTTGGCCATCAAATTCCTGAGCAAGATCTTCAAATTTTAATGGAAGCTGGTGATGTAGATGGGGATGGACATTTGGACTATGGAGAGTTTGTAGCAATTTCTGTTCACTTAAGAAAGATGGGAAATGACGACCACCTTCTCAAAGCCTTTGAGTTCTTTGATCAAAACAACAGTGGGTATATAGAGATTGAAGAGCTAAGGGATGCCTTAGCTGGTGAACTTGAGTCAAACAGTGAAGAAGTTATTAATGCTATCATTCATGATGTGGACACAGACAAGGATGGACGGATAAGTTATGATGAATTTGCTGCAATGATGAAGGCTGGCACTGATTGGAGGAAAGCATCAAGGCAGTATTCACGAGAGCGGTTCAATAATCTGAGCTTGAAACTAATAAGGGATGGATCATTGGAAGTTAGGCCATGA 1581 0.4541 MGNCCVTPVPSEKKKGKKKQNPFSLDYAANQGNGGSKLSVLKDPTGREIELRYELGRELGRGEFGITHLCTDKSTGDVYACKSISKKKLRTAVDIDDVRREVEIMKHLPKHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVFFKPGERFTEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVLDFKRDPWPKVSENAKDLVKKMLDPDPKRRLSAQEVLDHPWLQNAKKAPNVSLGETVRARLKQFSMMNKLKKRALRVIAEHLSVEEVAGIKEGFQLMDTGNKGKINMDELRVGLQKLGHQIPEQDLQILMEAGDVDGDGHLDYGEFVAISVHLRKMGNDDHLLKAFEFFDQNNSGYIEIEELRDALAGELESNSEEVINAIIHDVDTDKDGRISYDEFAAMMKAGTDWRKASRQYSRERFNNLSLKLIRDGSLEVRP* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1613 526 Gene3D - 320 494 - -
Vvi8g1613 526 SMART efh_1 358 386 IPR002048 GO:0005509
Vvi8g1613 526 SMART efh_1 430 458 IPR002048 GO:0005509
Vvi8g1613 526 SMART efh_1 466 494 IPR002048 GO:0005509
Vvi8g1613 526 SMART efh_1 394 422 IPR002048 GO:0005509
Vvi8g1613 526 Gene3D Transferase(Phosphotransferase) domain 1 139 319 - -
Vvi8g1613 526 FunFam Calcium-dependent protein kinase 7 320 495 - -
Vvi8g1613 526 CDD STKc_CAMK 52 310 - -
Vvi8g1613 526 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Vvi8g1613 526 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Vvi8g1613 526 Gene3D Phosphorylase Kinase; domain 1 55 138 - -
Vvi8g1613 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 487 - -
Vvi8g1613 526 FunFam calcium-dependent protein kinase 13 139 319 - -
Vvi8g1613 526 SMART serkin_6 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1613 526 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Vvi8g1613 526 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Vvi8g1613 526 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Vvi8g1613 526 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Vvi8g1613 526 ProSiteProfiles Protein kinase domain profile. 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1613 526 Pfam EF-hand domain pair 371 420 IPR002048 GO:0005509
Vvi8g1613 526 SUPERFAMILY EF-hand 340 516 IPR011992 -
Vvi8g1613 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vvi8g1613 526 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Vvi8g1613 526 Pfam EF-hand domain pair 430 492 IPR002048 GO:0005509
Vvi8g1613 526 FunFam Calcium-dependent protein kinase 1 55 138 - -
Vvi8g1613 526 Pfam Protein kinase domain 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1613 526 CDD EFh 430 492 IPR002048 GO:0005509
Vvi8g1613 526 SUPERFAMILY Protein kinase-like (PK-like) 52 319 IPR011009 -
Vvi8g1613 526 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Vvi8g1613 526 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1613 Vvi-Chr8 21643932 21648587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1613 1 524 EF-hand Containing Proteins AT5G19450 79.962 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi8g1613 Pkinase 2.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1613 K13412 - vvi:100258857 1032.32