Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1612 ATGGAGATGGCTGTCGCATTTCACAAACCTCTCAATTCTCGTCTCTCCATCAACCCTAACCCTAACTCTAGGAGAGGCCTTTGTTTCTCGTCATCTCTGTTATTCAATTGCAGATTGCCTTCATCTCCAATTGCCACAACACCATTCAAATTCCCCTTCAGAAATTCGGTTCCCGCTCCGATCAAATGCTCTATTTCCACAGAAACTGCCAAAGAGAAAAAGAGGCAATTAATGCGAAGAAGAGACATAAGGAACATTGCGATTGTTGCTCATGTAGATCATGGAAAGACTACATTAGTGGATGCAATGCTGAAGCAAGCAAAGGTATTTCGTGATAACCAATTTGTACAGGAAAGAATAATGGACTCAAATGATCTAGAGCGTGAAAGGGGAATTACAATACTTAGCAAAAACACATCAATCGGCTATAAGGATACAAAAATAAACATTATTGATACTCCTGGCCACTCTGATTTTGGAGGCGAAGTGGAACGCATACTCAATATGGTGGAGGGGGTTCTTCTAGTGGTAGATTCTGTTGAGGGGCCGATGCCACAAACAAGATTTGTTTTAAAGAAGGCTCTGGAATTTGGGCATGCTGTTGTTGTAGTTGTTAATAAGATCGATAGGCCTTCTGCTCGCCCAGATTATGTCATCAATGCCACTTTTGAACTCTTTATTGAACTGAATGCTACAGATGAACAGTGCGATTTCCAAGCGATATATGCAAGTGGTATCAAAGGAAAGGCTGGACTATCTCCTGAAAATTTGGCAGATGATCTTGGACCACTTTTTGAATCTATAATTAGATGTATACCTGGACCACGAATTGACAAAGATGGTGCACTACAGATGCTTGCTACAAATATTGAATATGATGAACATAAAGGTCGGATTGCTATTGGACGCGTTCATGCTGGGGTTTTGCAGAAGGGAATGGATGTGAGGGTATGCACCACAGAAGACGCTTGTAGATATGCAAGAGTCAGTGAACTTTTTGTATATGAAAAATTCAGTAGGGTTCCTGCAGAAACTGTGGAAGCTGGTGATATATGTGCTGTTTGTGGTATTGATGACATTCAGATTGGAGAGACAATTGCCGACAAAAGTTCTGGGAAGCCATTACCTGCCATTAAGGTAGAAGAGCCAACAGTGAAAATGGCTTTTTCTATCAATACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACCAGTAGAAACCTAAGAGACCGGCTCTATCGTGAGATTGAGCGGAATTTGGCTATGAGAGTTGAAGATGGTGAAACTGCAGATACATTCATTGTTAGTGGGCGGGGTACTTTACATATTACCATACTGATAGAAAACATGCGAAGGGAAGGATATGAATTCATGGTGGGGCCCCCAAAAGTTATCAACAAAAGAGTGGATGACAAGTTGCAGGAACCTTTTGAGATTGCCACTGTGGAGGTACCAGAAGAACACATGGGTTCTGTGGTTGAACTTCTTGGCAAAAGGCGTGGGCAGATGTTTGATATGCAAGGAGTTGGGTCTGAGGGAACTACACTACTTAAATACAAGATACCAACCCGTGGCCTTCTTGGATTGCGAAATGCAATTTTAACAGCTTCTCGAGGCACTGCAATTCTCAATACCATATTTGATAGCTATGGACCTTGGGCTGGTGATATTACTACCAGGGATCAGGGTTCATTGGTTGCATTCGAGGAGGGAAGCACAACATCTTATGCCCTTTGTAGTTCACAGGAGAGAGGGCAGATGTTCGTTGGACCTGGAGTTGACGTTTATAAAGGGCAAATTGTAGGCATTCATCAGCGTCCTGGTGACTTATCCCTAAATGTGTGCAAGAAGAAGGCTGCAACAAATGTGCGGTCCAACAAGGAACAAACTGTGGTTCTTGACACACCTTTGGATTACAGTCTAGATGACTGCATAGAGTACATTCAAGAAGATGAGATGGTGGAAGTCACTCCTTTAAGCATCCGAATGTGCAAGAATCCAAAACTTGCAAAGAAGACAAGGTAA 2028 0.4241 MEMAVAFHKPLNSRLSINPNPNSRRGLCFSSSLLFNCRLPSSPIATTPFKFPFRNSVPAPIKCSISTETAKEKKRQLMRRRDIRNIAIVAHVDHGKTTLVDAMLKQAKVFRDNQFVQERIMDSNDLERERGITILSKNTSIGYKDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINATFELFIELNATDEQCDFQAIYASGIKGKAGLSPENLADDLGPLFESIIRCIPGPRIDKDGALQMLATNIEYDEHKGRIAIGRVHAGVLQKGMDVRVCTTEDACRYARVSELFVYEKFSRVPAETVEAGDICAVCGIDDIQIGETIADKSSGKPLPAIKVEEPTVKMAFSINTSPFVGREGKYVTSRNLRDRLYREIERNLAMRVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKRVDDKLQEPFEIATVEVPEEHMGSVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDITTRDQGSLVAFEEGSTTSYALCSSQERGQMFVGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNVRSNKEQTVVLDTPLDYSLDDCIEYIQEDEMVEVTPLSIRMCKNPKLAKKTR* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1612 675 CDD TypA_BipA 82 275 IPR047041 -
Vvi8g1612 675 CDD BipA_TypA_II 283 376 IPR047042 -
Vvi8g1612 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 283 IPR027417 -
Vvi8g1612 675 SUPERFAMILY Translation proteins 229 377 IPR009000 -
Vvi8g1612 675 FunFam GTP-binding protein TypA 467 560 - -
Vvi8g1612 675 Gene3D bipa protein 561 640 IPR042116 -
Vvi8g1612 675 CDD BipA_III 383 461 IPR047043 -
Vvi8g1612 675 SUPERFAMILY EF-G C-terminal domain-like 381 465 IPR035647 -
Vvi8g1612 675 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 276 IPR000795 GO:0003924|GO:0005525
Vvi8g1612 675 SUPERFAMILY EF-G C-terminal domain-like 476 591 IPR035647 -
Vvi8g1612 675 NCBIfam small GTP-binding protein domain 83 212 IPR005225 GO:0005525
Vvi8g1612 675 Gene3D Elongation Factor G (Translational Gtpase), domain 3 384 667 - -
Vvi8g1612 675 FunFam GTP-binding protein TypA 384 488 - -
Vvi8g1612 675 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 75 251 - -
Vvi8g1612 675 NCBIfam translational GTPase TypA/BipA 83 671 IPR006298 GO:0003924|GO:0005525
Vvi8g1612 675 SMART EFG_C_a 473 562 IPR000640 -
Vvi8g1612 675 FunFam GTP-binding protein TypA 79 276 - -
Vvi8g1612 675 FunFam GTP-binding protein TypA 561 647 - -
Vvi8g1612 675 Coils Coil 674 675 - -
Vvi8g1612 675 Pfam Elongation factor Tu domain 2 297 366 IPR004161 GO:0005525
Vvi8g1612 675 Pfam Elongation factor Tu GTP binding domain 82 273 IPR000795 GO:0003924|GO:0005525
Vvi8g1612 675 Gene3D - 467 560 - -
Vvi8g1612 675 FunFam GTP-binding protein TypA 277 377 - -
Vvi8g1612 675 Pfam Elongation factor G C-terminus 474 559 IPR000640 -
Vvi8g1612 675 Gene3D Translation factors 277 377 - -
Vvi8g1612 675 Gene3D - 80 276 IPR027417 -
Vvi8g1612 675 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Vvi8g1612 675 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Vvi8g1612 675 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Vvi8g1612 675 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Vvi8g1612 675 CDD BipA_TypA_C 476 555 IPR035651 -
Vvi8g1612 675 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1612 Vvi-Chr8 21627959 21639625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1612 81 210 Eukaryotic Initiation Factors Gene Family AT3G22980 43.939 2.90e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1612 K06207 - vvi:100264026 1340.1