Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1608 ATGCACAAACAAACTGAAAGAAAAAACCAACCAGAATCTAAAGCAGATAGCAACAATCCATACTCGATCTGCTCTCAACCTTGGTGGCGTGGGCTTGGGAATGATGTCATCTCTCCAGATGTTTTAGGTGAAAGTTCACCAAATTCAGCTTCAGCAGAACACCCAAATGGTGGTGTAGGAACTATAGCCATCAAGTCGCGAGCCAAAGTTGTGACGGATAATGGAAATGATCCTGAAAAAGAAATGAAAATTACTTTAGCCTCGCAATCAGATGGAAGCTGTGGACAAGAACAAAAGCATCCTCAGCAAGCTGTATCAATGATGCCTATGACTATGGCTGAATACCACCTTGCACCACCTTCCCAGCTGGAACTTGTTGGCCACTCAATTAGCAACACGGATGGAGTTACAAGTAAAACACTTTTGCAGGCGTGTGCATCATATCCATATTCTGAACCTTATTACACGGGAGTCATTCCTGCTTATGGACCTCAGGGTTTGGTACAATCTCAATTTCTTGGTGTGAATGTGGCTAGAATGGCTTTGCCTATTGAAATGGCAGAGGAACCTGTTTATGTGAATGCAAAACAGTATCATGGGATTCTGAGGCGAAGACAATCACGGGCGAAGGCCGAGCTGGAAAAAAAACTGATAAAAGTTAGGAAGCCATATCTTCATGAATCAAGGCACCAGCATGCTATGAGAAGGGCAAGAGGATGTGGAGGCCGTTTTCTCAACACAAAGAAGCTTGATTCTAATGCATCGTATGACATGCCTGACAAGGGCTCTGATCCAGATGTAAACCTTTCAACACGACCCATCAGCTCATCAGTCTCTGAATCTCTGCCCTCCAATTCTTCCCGAAATGAGGATTCCCCCACCAGTCATCTAGATGCAAGAGGTCCCTCTGTGCAGGAATTGCACAATAGGCAAATAGCCTCCCATGGAAATGGCAACAGCTGTTATCCACACAACCAGGGATTTCAGTTGTCGACATACCATTCCCTTAAAGATGATCGCGTGGAAGAAGGAGACCACGCAGGGCGGCAGCATGAGAGAATTCTGGTGAATAGGGCCCCCCACAGGGCCCTAACCATCAAATGA 1104 0.4565 MHKQTERKNQPESKADSNNPYSICSQPWWRGLGNDVISPDVLGESSPNSASAEHPNGGVGTIAIKSRAKVVTDNGNDPEKEMKITLASQSDGSCGQEQKHPQQAVSMMPMTMAEYHLAPPSQLELVGHSISNTDGVTSKTLLQACASYPYSEPYYTGVIPAYGPQGLVQSQFLGVNVARMALPIEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDSNASYDMPDKGSDPDVNLSTRPISSSVSESLPSNSSRNEDSPTSHLDARGPSVQELHNRQIASHGNGNSCYPHNQGFQLSTYHSLKDDRVEEGDHAGRQHERILVNRAPHRALTIK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1608 367 SMART cbf3 186 247 IPR001289 GO:0003700|GO:0006355
Vvi8g1608 367 MobiDBLite consensus disorder prediction 268 299 - -
Vvi8g1608 367 ProSitePatterns NF-YA/HAP2 subunit signature. 192 212 IPR018362 GO:0003677|GO:0016602
Vvi8g1608 367 MobiDBLite consensus disorder prediction 1 65 - -
Vvi8g1608 367 MobiDBLite consensus disorder prediction 41 55 - -
Vvi8g1608 367 Gene3D - 187 248 - -
Vvi8g1608 367 MobiDBLite consensus disorder prediction 250 301 - -
Vvi8g1608 367 ProSiteProfiles NF-YA/HAP2 family profile. 187 247 IPR001289 GO:0003700|GO:0006355
Vvi8g1608 367 PRINTS CCAAT-binding transcription factor subunit B signature 221 244 IPR001289 GO:0003700|GO:0006355
Vvi8g1608 367 PRINTS CCAAT-binding transcription factor subunit B signature 190 212 IPR001289 GO:0003700|GO:0006355
Vvi8g1608 367 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 65 299 IPR001289 GO:0003700|GO:0006355
Vvi8g1608 367 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 189 244 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1608 Vvi-Chr8 21598160 21602704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1608 23 252 CCAAT-HAP2 Transcription Factor Family AT5G12840 41.277 4.69e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vvi8g1608 CBFB_NFYA 7.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1608 K08064 - tcc:18598988 401.749