Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1606 ATGTCATTCCATTCGGAAGACTGGAAAAAAAGAGCTGACGGAGTCACTGTATGGACCAGCAAAACAAGCCATCTATCTGTTGCTTCAGCTGCTCTCGGTGACAATGGCAATTTGGTGCTGATGAACAGTAGCAAAGATGTGGTCTGGCAAAGTTTTGATACTCCTGCCGACACGCTGCTCCCTGGCCAGATCTTATCTGCTTCTCAAACACTTCGGCCCTTGAGCAAGAGTTCTGTTTCAAGTTACTATGATCTTCAATTGAATGTTCAGGGTCGGTTGCAACTTAGGTGGGAAACCAATATCTCTTATTGGACAGTTGGAGGCCAGTCTGGTTCGAATCTTAGTGCTGTCCTCACATCTGATGGAGCACTGCAACTTCTTGATCGAAGATCAAAGTCTGTTTGGTCTGTGTTTGGAGAAGATCATGATGACCCCCTTGTGAAATTCAGGTTTCTTAGGCTAGATGCTGATGGCAATCTCCGATTATATTCGTGGGCAAAAGCTTTGAGGTCATGGAAATCAGTATGGCAAGCTGTTGAGAACCAATGCAACGTTTTTGCAACGTGCTACCTCTCTGGTGTCTGTCTTTTCAATGCATCAGGCTCCCATGTTTGCAAATGCCCATTTACGTCTACAGCTGAGTCTAGCTCTGAATGTTTGGTTCCTAGCCAACTGGGGTGTGATTCTGGTTCCACCCTGGTTACCTATGATCATACCTTTCTGTATGGGATTTACCCACCAAATGATTCAGTTTCGACAATTAGTTTGGAGCAGTGCAAAACCTTGTGCCTAAACGATCCATCTTGCACAGCAGTATCCTTTACAAATGATGGAATTGCACAATGCCACACGAGGAAAACCAGATTTATCACCGGATATTCAGACCCCGCTGTGGGTTCAATATCTTTTGTTAAGATGTGTTTGGACCCAGTTGCTGCTTTTCCTAATCTCTCAATATCCTCCCCACCTCAATCTCGGCTCAAAAGATCGTATGCTTTTAGCGGTCAGTGTCTAATCGGGGCGCTTTCAGGTACACTTGTAACATTCGTTACAATTCAGTTGGGAATTGGCTTCTGCTTCTACAAGAGAAGAAACTTTTACAGGAAGCAAGCTGCTTTAGCCTTAAGGGACCCTAACTCACAAGTCTTGCTCATGTTATCCTACAATGAAATCATGGATCTGACTGGGAATTTTGGGTACCACCTCGGGCCAATGGTGTTTAAAGGCATGCTTCCAAACGATCAGCCAGTTGCAGTCAAAGGCCTGAAAACTTCCATAGAAGAAAGGAAGTTCCGAGCTTCAGTTTCAAGGATTGGAGGCATTCATCAGAAAAACCTAGCAAAGCTAGAGGGCTACTGTTGTGAATCAGACCACAGATTTTTAGTCTACGAATTCGTTGAAAACGGTTCTGTAGATCACTGCATACAAGATCCTAAGCTGAGCAGAAGGCTAACTTGGAGGAAGAGAATCAACATATGCTTGAGTGTGGCCAGAGCCATTTCCTATCTGCACGCTGAGTGTAGGGAGTTTGTAAGCCATGGGAATTTGAAATGTGAAAACGTGCTTTTAGATGAAAACCTTGATGCCAAGGTGACCGAATTTGGACTAGGGAGGCTTCACAGCGATACCTTAGATGAATCTGCAGAGAATGATGTGGAAGGTTTTGGGAAGATGATGGTAATATTAGTAACCGGTCAAACAGAAGCCGACGATGTTTGCGAGTGGGCTTATAAGGAATGGATCTCTGGGCATGCAGAAGGGATTGTGGATGAAAGAATAGAAGGTGGGGTGGATTCAGAAGAGGTGGAGCGCCTGCTGAGACTTGCATTTTGGTGCCTGCAAGTCGACAAACGCCTCAGACCTTCAATGGGCGAGGTGGTGAAGGTGTTTGAGGGCACCTTGACTGTGGACCGCCCTCCACCTCCTTTCCTTTGCCGGATGCCACTGGAAGAAGAAGAAGACTACGACGAAGAAAAAGACAACTAA 1986 0.4542 MSFHSEDWKKRADGVTVWTSKTSHLSVASAALGDNGNLVLMNSSKDVVWQSFDTPADTLLPGQILSASQTLRPLSKSSVSSYYDLQLNVQGRLQLRWETNISYWTVGGQSGSNLSAVLTSDGALQLLDRRSKSVWSVFGEDHDDPLVKFRFLRLDADGNLRLYSWAKALRSWKSVWQAVENQCNVFATCYLSGVCLFNASGSHVCKCPFTSTAESSSECLVPSQLGCDSGSTLVTYDHTFLYGIYPPNDSVSTISLEQCKTLCLNDPSCTAVSFTNDGIAQCHTRKTRFITGYSDPAVGSISFVKMCLDPVAAFPNLSISSPPQSRLKRSYAFSGQCLIGALSGTLVTFVTIQLGIGFCFYKRRNFYRKQAALALRDPNSQVLLMLSYNEIMDLTGNFGYHLGPMVFKGMLPNDQPVAVKGLKTSIEERKFRASVSRIGGIHQKNLAKLEGYCCESDHRFLVYEFVENGSVDHCIQDPKLSRRLTWRKRINICLSVARAISYLHAECREFVSHGNLKCENVLLDENLDAKVTEFGLGRLHSDTLDESAENDVEGFGKMMVILVTGQTEADDVCEWAYKEWISGHAEGIVDERIEGGVDSEEVERLLRLAFWCLQVDKRLRPSMGEVVKVFEGTLTVDRPPPPFLCRMPLEEEEDYDEEKDN* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1606 661 Gene3D Transferase(Phosphotransferase) domain 1 466 546 - -
Vvi8g1606 661 Gene3D - 8 56 IPR036426 -
Vvi8g1606 661 Gene3D Phosphorylase Kinase; domain 1 362 465 - -
Vvi8g1606 661 Pfam Protein tyrosine and serine/threonine kinase 406 543 IPR001245 GO:0004672|GO:0006468
Vvi8g1606 661 ProSiteProfiles Bulb-type lectin domain profile. 1 53 IPR001480 -
Vvi8g1606 661 SUPERFAMILY Protein kinase-like (PK-like) 405 651 IPR011009 -
Vvi8g1606 661 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 545 638 - -
Vvi8g1606 661 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 466 544 - -
Vvi8g1606 661 Gene3D - 57 179 IPR036426 -
Vvi8g1606 661 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 174 IPR036426 -
Vvi8g1606 661 ProSiteProfiles PAN/Apple domain profile. 227 307 IPR003609 -
Vvi8g1606 661 Gene3D Transferase(Phosphotransferase) domain 1 547 638 - -
Vvi8g1606 661 SMART ntp_6 228 306 IPR003609 -
Vvi8g1606 661 ProSiteProfiles Bulb-type lectin domain profile. 56 175 IPR001480 -
Vvi8g1606 661 SUPERFAMILY alpha-D-mannose-specific plant lectins 13 107 IPR036426 -
Vvi8g1606 661 Pfam S-locus glycoprotein domain 149 207 IPR000858 GO:0048544
Vvi8g1606 661 PANTHER OS07G0415500 PROTEIN 13 645 - -
Vvi8g1606 661 ProSiteProfiles Protein kinase domain profile. 392 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1606 661 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 362 465 - -
Vvi8g1606 661 Pfam D-mannose binding lectin 15 69 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1606 Vvi-Chr8 21587148 21590258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1606 313 626 Receptor kinase-like Gene Family AT4G23220 27.913 8.02e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi8g1606 PK_Tyr_Ser-Thr 7.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1606 - - vvi:100253673 1297.34