Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1604 ATGAATCACTTAACTGTTGTGACTGAGGATGCTTTTGCCAGTTTGCTTGAACTTGCTGCAAACAATGACTTTGGGCGCTTTAAACAATCAATTGAGCGCGAGCCTTCTGGTGTTGATGAAATTGGACAATGGTATGGCCGTCAGAAGGGCTCAAAACAGATGGTCCTTGAGTATAGAACTCCCTTAATGGTAGCTGCTACATATGGTAGTATTGATGTAATGAAGCTTATTCTTTCTCTATCAGACTCTGACGTGAATCGATTCTGTGGTCTTGATAAAAGTACTGCACTTCATTGTGCTGCATCTGGTGGATCTGTCAATGCTGTTGATGTGGTGAAACTGCTTTTACTAGTGGGTGCTGATCCTAATTCACTTGATGCCAATGGTCATCGGCCTGTTGATGTACTTGTTGTTCCTCCAAAGCTTCAGGATGTCAAGGCTACCCTTGAAGAACTCCTTGCAACCAATGGTTCTTCTGTTGAGCGGAACCTGAGCATTTCAACCGTAACCTCAAATTCAAATTCATCACCGCTTTCATCTTCTCCAGAGAATGGATCTTCGTCTTCTGATTCAGATTCACCTCCTTCTCCGATGAATGTGAAGTTAAATGACCTCCCTATTTCTTGTGCATCAGAGAAGAAAGAATATCCTGTTGACCCATCTCTCCCTGATATCAAGAATAGCATCTATGCAACAGATGAATTTCGAATGTTCTCATTCAAGGTTCGACCTTGTTCTCGTGCCTACTCCCATGATTGGACCGAGTGCCCTTTTGTTCATCCAGGTGAAAATGCTCGAAGAAGGGACCCAAGAAAATTCCACTACAGCTGTGTCCCTTGTCCTGATTTCCGAAAGGGAGCTTGCAGGCGTGGTGATATGTGTGAGTATGCTCATGGAGTTTTTGAGTGCTGGCTCCATCCAGCTCAGTATAGGACAAGGCTCTGCAAGGATGGTACAAATTGCAATCGAAGAGTCTGCTTCTTTGCTCATACAACTGAAGAACTCCGGCCATTGTATATGTCAACTGGTTCTGCTGTTCCTTCTCCTCGCCCAAGTTCTTCCACGGCCACTGCTATGGATTTTGCAACAGCCATGAACCTCATACCTGGCTCTCCTTCATCTGTCTCTGTCATGTCTCCTTCGCCGTTCACCCCCCCATTGTCTCCATCGGCCAATGGTGTTTCACACTCTTCCATGGGTTGGGCCCAACCAAATGTTCCAACCTTGCATCTCCCTGGTAGCAATCTTCAGTCCAGCCGCTTGAGATCATCCCTTAATGCAAGGGACATCCCAGCTGAAGACATCAATTTGATGCTGGATTTTGATATACAGCAACATCAACTGCTAAATGAACTGTCTTGCCTCTCTCAACCATGTGTTAACTCTAATTCTTTGAACCGTTCTGGACGGTCAAAAACCCTAACCCCCTCAAACCTTGATGAGCTCTTTTCAGCTGAGAGCTCATCTCCTCGGTACTCTGATCAAGCATTGGCATCTGCTGTTTACTCCCCAACGCATAAATCAGCGGTTCTAAATCAATTTCAGCAGCAGCAGAGCATGTTATCGCCAATCAACACAAATTTTTCCCCAAAAAATGTTGACCATCCTTTGTTGCAGGCCTCCTTTGCTTCCTCGGGGAGGATGTCCCCGCGAAGTATGGAACCTATCTCGCCAATGAGCTCTCGGGCCTCTATGTTTGCTCAACGTGAGAAGCAGCAACAACAACAGTTTCGTAGCCTGAGCTCTCGGGACCTTGGCTCTAACTCCTCTGCCATTGTTGGTTCACCCATAAATTCCTGGTCAAAATGGGGATCCTCCAACGTTAAGCCCGACTGGGCAATGAATGCAAATGAGTTGGGTGGGCACAGAAGATCAAATTCATTTGAGCTTGGGAACAATGGAGAAGAGCCTGATCTATCATGGGTTCAATCACTCGTCAAAGAATCTCCTACGGAGACCAAAGAGAAGGCGGCAACACCTGCCTTGGACACTGCTGAGGCTTCATCATCCAGTGATGGTTCCAATTTGAATTCTCAAATTGAATCAATCGACCATGCTGTTCTTGGGGCATGGCTTGAGCAGATGCAGCTCGATCAGCTCGTGGCTCAGTAA 2112 0.4621 MNHLTVVTEDAFASLLELAANNDFGRFKQSIEREPSGVDEIGQWYGRQKGSKQMVLEYRTPLMVAATYGSIDVMKLILSLSDSDVNRFCGLDKSTALHCAASGGSVNAVDVVKLLLLVGADPNSLDANGHRPVDVLVVPPKLQDVKATLEELLATNGSSVERNLSISTVTSNSNSSPLSSSPENGSSSSDSDSPPSPMNVKLNDLPISCASEKKEYPVDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTTEELRPLYMSTGSAVPSPRPSSSTATAMDFATAMNLIPGSPSSVSVMSPSPFTPPLSPSANGVSHSSMGWAQPNVPTLHLPGSNLQSSRLRSSLNARDIPAEDINLMLDFDIQQHQLLNELSCLSQPCVNSNSLNRSGRSKTLTPSNLDELFSAESSSPRYSDQALASAVYSPTHKSAVLNQFQQQQSMLSPINTNFSPKNVDHPLLQASFASSGRMSPRSMEPISPMSSRASMFAQREKQQQQQFRSLSSRDLGSNSSAIVGSPINSWSKWGSSNVKPDWAMNANELGGHRRSNSFELGNNGEEPDLSWVQSLVKESPTETKEKAATPALDTAEASSSSDGSNLNSQIESIDHAVLGAWLEQMQLDQLVAQ* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1604 703 Pfam Ankyrin repeats (3 copies) 57 124 IPR002110 GO:0005515
Vvi8g1604 703 MobiDBLite consensus disorder prediction 168 203 - -
Vvi8g1604 703 MobiDBLite consensus disorder prediction 168 198 - -
Vvi8g1604 703 MobiDBLite consensus disorder prediction 561 588 - -
Vvi8g1604 703 SUPERFAMILY Ankyrin repeat 58 136 IPR036770 -
Vvi8g1604 703 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Vvi8g1604 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vvi8g1604 703 MobiDBLite consensus disorder prediction 663 677 - -
Vvi8g1604 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vvi8g1604 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Vvi8g1604 703 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Vvi8g1604 703 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Vvi8g1604 703 MobiDBLite consensus disorder prediction 646 677 - -
Vvi8g1604 703 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Vvi8g1604 703 Gene3D - 3 191 IPR036770 -
Vvi8g1604 703 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vvi8g1604 703 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vvi8g1604 703 Gene3D - 274 337 - -
Vvi8g1604 703 PANTHER UNKEMPT FAMILY MEMBER 17 649 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1604 Vvi-Chr8 21572868 21574979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1604 9 699 C2H2 Transcription Factor Family AT5G12850 55.035 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi8g1604 Ank_2 1.4e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1604 - - vvi:100258822 1296.95