Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1599 ATGGCTTTGGATTTGATGATAAAAGCTCCAGAAGTCTCAGATAATTTGGGGAGGAATGTCAAAGAAATGATTGCCTTGAGATGTTTGGAGGCTTTATTTAGTGGAATCACAAATGATGTTCATCCTGTTGTGCATTCAAAAATGGGGTTCGACCCATCTGAAAGCTGTGAAGATGTTCTCCAGTGCATATTGCGTAAGGTGTCAGCATCAAAACTAAGAATGGGAGAACCAGAGCTGTTAAAATGGAATGTTAACCCTTTCATTGCACATAAAAGAGCATGTTTACCTAAGTGTGCTTTGCAAGAGTTGAAAGATACAATTCTCGAGGGCAGCCATCCATCTGCTGTATCCTTGAAGGAAAGGAGTGGATTGAGATTTGAAAGTCAATGTGAGACTAGAACACCTAATGGTGATGGTGATTCTGGTGCAGTTGCACCAAGGGTTGATGAGGGTACTGCCTGTGGTCAAGTTGAGGCTGCAAAAGGAGACTTAATTCCTCTGACTGCTGAAAATGAGAACAATCTCTTGCCAGAAGATACAACTGAGAGGATTTTATTGCCCTATAAAAGGGGCCTGGATGACTTGCCTGCCAAAAATTTGATGGGGCAATTTAACCCAAATGTAGACAGTGTGAATTATGGTGGTGATTCCCATTCAAATGCCAAGAGGCGTAAACATGATGCCTTTTGCTCCATTACATCTATAGAACCAAACCCAGTTTCTCTGCATGGAAAGAAATTGTTAGAAGATTCATCTCGACCAAGTATTAATGAGTGTGACTTGGCAAAAGAATCTCAACTGGGAGACCTGGAGGGAAGCACAATGGTTTCTGAGGATGATCATGATAAGTATGTTGTTTCAAAGAGGGTTGAGCAGATCACTGATGTTGAACATGGAGAATTTGAGCATAATCAAACGCAGATTCCTTTTCACAGCAATAAAATGCCTCAAAATATGCCTAGAGATGAATCCCACCATGATATTTCTGTTGATGAGGCTAAAGATGATGATGTTGAGCATTGGGTTGAACCAAACAAATCAATTGGTGCAGCCTCAGATGGAAGCCAGCAAAAAACTGCTGTTGATGAAGCCAAGGATGATGGCGATTGTAGGGTTGAACCAAATAAATCAAGTGGATCCTCAGATGAAAGCCAGAAAAAAAATTCTGTTGATGAAGCCAAAGATGATGGTGATCATAGTTCTCAACCAAAGGCATCAAATGACAAACTTCCTAATGAAGCACACCATAAAGTTTTTGTAGATGAAGCCAAAGATGACACTGAGCATTGTTGTGAAGAAGAAATGCTGAGTGATAGCACTGAGTATCATGATGAGGAGGATGGTATTGCCATGGAGAGACAAAATTTCCTGAGTTCTAAATGCACATTCAATCATGATTCCTTGTCAATAGCTGGCTGGACAGAGCAAAATCTTTGTATGAAGTGTACTAAAGACGGTCAGTTGTTGGTTTGTAGTTCCAGTGGCTGTCCATTGGTGGTTCATGAGAACTGCTTGGGCTGCCCCCCCAGTTTTGACAACATGGGAAACTTTTACTGCCCCTTTTGTGCATATTCCCGTGCAGTTTCTGAATACCTTGAGTCCAAGAAAAAGGTCTCCTTGGCAAAGAAAGAACTGGCTTCATTTATCAATGCAGGGATGAAGCATGAGCCTGTCAAACCCAAGAAAAAACATAGAAAAAAGAATGAAAAGCTTAATGAAAGTGCTAATCTTGTCAAGGTTTGTGAAAATGGGCATGTAAAAGAGAAAAGACAGACTCGAGCAAACCATGGCGATGCTCAAGTCACTGATCAACTAATTAGGAGAAATGTAGAGAAGCATGATGGTGTCGAGGAGCAGGGAGTTGCAAATTTAGGAGTTCAGCAGGAAGCTTTACAACAGCAGATTAGTGATCCACTGGAGGATCCTGCTTCAGGAACTTCTGGAGATGAAAATGATAAGCCTTCCAGTTCTACTTACTATATAAGATTCAGAAGGCAACAACAGCAGTACACATTTCCACCAATTCATCAGTTGAGAAGAAAGAAACTTGCTTGGACAGCTAAGGAGGAAGAGATACTAAAGGTGGGAGTGCAGAAATTTTCAAATGATCATGATAAAAGTATTCCATGGAAGAAGATTATGGAATTTGGTGGTACTGTATTTCAGAGAGGTCGTACCACAATTGACCTCAAGGATAAATGGAGAAACATTTGCAAAGGAAGCCCAAAATCAAAGTGA 2238 0.408 MALDLMIKAPEVSDNLGRNVKEMIALRCLEALFSGITNDVHPVVHSKMGFDPSESCEDVLQCILRKVSASKLRMGEPELLKWNVNPFIAHKRACLPKCALQELKDTILEGSHPSAVSLKERSGLRFESQCETRTPNGDGDSGAVAPRVDEGTACGQVEAAKGDLIPLTAENENNLLPEDTTERILLPYKRGLDDLPAKNLMGQFNPNVDSVNYGGDSHSNAKRRKHDAFCSITSIEPNPVSLHGKKLLEDSSRPSINECDLAKESQLGDLEGSTMVSEDDHDKYVVSKRVEQITDVEHGEFEHNQTQIPFHSNKMPQNMPRDESHHDISVDEAKDDDVEHWVEPNKSIGAASDGSQQKTAVDEAKDDGDCRVEPNKSSGSSDESQKKNSVDEAKDDGDHSSQPKASNDKLPNEAHHKVFVDEAKDDTEHCCEEEMLSDSTEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTKDGQLLVCSSSGCPLVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFINAGMKHEPVKPKKKHRKKNEKLNESANLVKVCENGHVKEKRQTRANHGDAQVTDQLIRRNVEKHDGVEEQGVANLGVQQEALQQQISDPLEDPASGTSGDENDKPSSSTYYIRFRRQQQQYTFPPIHQLRRKKLAWTAKEEEILKVGVQKFSNDHDKSIPWKKIMEFGGTVFQRGRTTIDLKDKWRNICKGSPKSK* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1599 745 SMART sant 681 740 IPR001005 -
Vvi8g1599 745 SMART PHD_3 478 523 IPR001965 -
Vvi8g1599 745 Pfam Myb-like DNA-binding domain 683 736 IPR001005 -
Vvi8g1599 745 SUPERFAMILY FYVE/PHD zinc finger 474 526 IPR011011 -
Vvi8g1599 745 MobiDBLite consensus disorder prediction 359 373 - -
Vvi8g1599 745 Gene3D - 676 740 - -
Vvi8g1599 745 MobiDBLite consensus disorder prediction 345 414 - -
Vvi8g1599 745 MobiDBLite consensus disorder prediction 303 326 - -
Vvi8g1599 745 MobiDBLite consensus disorder prediction 385 414 - -
Vvi8g1599 745 ProSiteProfiles Myb-like domain profile. 677 738 IPR001005 -
Vvi8g1599 745 CDD SANT_TRF 685 739 - -
Vvi8g1599 745 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 740 - -
Vvi8g1599 745 ProSitePatterns Zinc finger PHD-type signature. 479 522 IPR019786 -
Vvi8g1599 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 600 IPR013083 -
Vvi8g1599 745 MobiDBLite consensus disorder prediction 637 656 - -
Vvi8g1599 745 SUPERFAMILY Homeodomain-like 679 739 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1599 Vvi-Chr8 21522592 21525987 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi8g1599 Myb_DNA-binding 4.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1599 - - vvi:100852566 1494.95