Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1598 ATGGAGAATAACAGAAAATCTCCATTAAAGCCATGGAAGAAAGGTCCCACGAGAGGCAAGGGAGGGCCTCAGAATGCTACATGCGAGTATCGTGGTGTTAGGCAAAGAACCTGGGGGAAATGGGTTGCAGAAATCAGGGAGCCCAAGAAGAGAACCAGACTTTGGTTGGGCTCTTTTGCGACTGCCGAGGAAGCTGCCATGGCTTACGATGAAGCTGCGAGGCGATTGTATGGGCCAGATGCTTATCTCAATCTACCCCACCTGCAATCTAACTTCAACCCATCAAACAAATCTCAGAAGTTAAAATGGTTTCCCTCCAAGAACTTCATTTCAATGTTTCCTTCTTGTGGGTTGCTTAATATAAATGCACAACCCAGTGTTCATGTCATTCATCAGCGGCTCCAAGAGCTTAAGAAGAACGGGGTTCTCAATCAATCCTCTTCTTCTAGTTCTTCTTCCTGTGATTCAAAAACTGATGCTCAAAACATGAATGACAAAGCCCCCAACAAAACTCATGAAAGTCCTAGAACTAACAACAAAGATGTGGAATTTTCATCAGAACAGATACCAGAAGAACGTGAAGAGAAGCCTCAGATTGATCTCAATGAGTTTCTTCAGCAACTGGGAATACTTAAGGATGAATGTCAGTCAGAAGGAAGCAATGCAGCAGAAGGTTTTGCAGCACCCGAATCTTCATTAAAAGATGACGATGAGCTTGTGGGTTTTGCTGAGGAAAGTTTCAACTGGGATGCACTGATCGAGATGCGTGGAATAGAGGATCATCAAGGAACAGATGCCAGTAGCTTCCAGGGCTATGGTATGTATGAAGAGCCAGCTTTCCCTCCATCCATCTGGAACTTCTGA 864 0.4456 MENNRKSPLKPWKKGPTRGKGGPQNATCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQSNFNPSNKSQKLKWFPSKNFISMFPSCGLLNINAQPSVHVIHQRLQELKKNGVLNQSSSSSSSSCDSKTDAQNMNDKAPNKTHESPRTNNKDVEFSSEQIPEEREEKPQIDLNEFLQQLGILKDECQSEGSNAAEGFAAPESSLKDDDELVGFAEESFNWDALIEMRGIEDHQGTDASSFQGYGMYEEPAFPPSIWNF* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1598 287 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vvi8g1598 287 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vvi8g1598 287 MobiDBLite consensus disorder prediction 1 27 - -
Vvi8g1598 287 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Vvi8g1598 287 MobiDBLite consensus disorder prediction 169 200 - -
Vvi8g1598 287 MobiDBLite consensus disorder prediction 141 168 - -
Vvi8g1598 287 MobiDBLite consensus disorder prediction 141 200 - -
Vvi8g1598 287 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Vvi8g1598 287 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vvi8g1598 287 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 253 - -
Vvi8g1598 287 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Vvi8g1598 287 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vvi8g1598 287 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Vvi8g1598 287 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1598 Vvi-Chr8 21518702 21519565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1598 5 287 AP2-EREBP Transcription Factor Family AT3G57600 58.188 6.75e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi8g1598 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1598 - - vvi:100252184 577.785