Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1596 ATGGAGGGAGGGAAGTCGAACAGGAAATCTAGTGCTATTTCTCTTCAACAGTTCATTTCTACCATCGCCCCTTTAATCGATTTGGAAAAGGATGCGGAGATATCCGGTTCAATCAGTTCAGGATCGTTGCGGAATTTGGATACTGCTCAAAAAAGGGGTTCCACCATTCTTAATTTGAAATGTGTTGATGCTCAGACTGGGCTAATGGGTAAGACACTTCTTGAGTTTCAGTCTACTAAAGGAGATGTTCTTCCCGCTCACAAGTTTGGGACTCATGATGTGGTTGTTTTAAAACCAAACAAGGCTGATTTAGGGTCTCCTGCCCTTGGACAAGGTGTCGTTTACCGCCTCAAGGACTCATCAATCACTGTTGCTTTTGATGATATTCCAGAAGAGGGTTTAAATAGTCCTTTGCGCCTTGAGAAAGTGGCAAATGAGGTGACATATCGTAGAATGAAGGATGCCCTGGTACAACTGAGTAAAGGTGTGCACAAGGGACCTACTGCTGATTTAATTCCAGTATTATTTGGAGAGAGACCTCCAACAGTGTCAAAGAAGGATGTTACGTTCACCCCATTTAATTCCAACCTCGATCGCTCTCAGAAAGATGCCATTTCAAAGGCCCTGTCATCCAAGAATGTATTTTTGCTGCATGGGCCTCCTGGAACTGGAAAAACCACAACTGTTGTGGAAATTATCTTACAAGAAGTGAAACGGGGGGCAAAGATTCTTGCTTGTGCTGCTTCAAATATTGCCGTTGATAACATTGTCGAGCGACTTGTCCCCTATCGAGTAAAGTTGGTGAGGTTGGGGCACCCTGCACGTTTACTGCCTCAAGTTCTGGAGAGTGCATTGGATGCGCAGGTTCTGCGAGGGGATAATACTGGTCTTGCGAATGATATTCGGAAGGAAATGAAGGCATTGAATGGGAAGCTATTGAAGACCAAAGACAAAAATACAAGGAGGGACATCAGAAAAGAGCTTAAGACTCTTTCTAAAGAGGAGCGTAAAAGGCAGCAGCTTGCTGTGACGGATGTAATTAAAAACGCAAACGTGGTCTTGACAACTTTAACTGGTGCGGTTTCTCGGAAGCTAGAGAACATCTCATTTGATTTGGTAATTATTGATGAAGCAGCACAAGCGCTTGAGATAGCATGTTGGATAGCTCTACTAAAGGGTTCAAGGTGTATACTTGCAGGAGACCATCTTCAGCTTCCTCCAACCATCCAGAGTGTTGAGGCCGAGAAGAAAGGCTTAGGAAGAACCCTCTTTGAACGCCTTGCTGATTTGTATGGTGATGAAGTCATGTCTATGCTAACTGTACAGTATCGCATGCATGAGCTTATTATGAACTGGTCATCTAAAGAGCTATATAACAGTAAGATAACAGCCCATCCAAGTGTTGCTGCACACATGCTTTCTGATCTTGAGGATGTAAAGAAGTCTTCTTCAACAGAATCAACCCTTCTTCTCATTGACACAGCTGGGTGTGACATGGAAGAAAAGAAGGATGAAGAAGATAGCACAATGAACGAGGGTGAAGCTGAGGTTGCTATATCCCACGCAAAAAGACTTGTCGATAGTGGAGTCCAAGCTTCTGATATTGGAATTATCACCCCTTACGCTGCGCAGGTTGTCTTGCTGAAGATGATGAAAAATAATGATGACAAGCTAAAGGACATGGAAATATCAACAGTTGATGGATTTCAGGGTCGAGAAAAGGAAGCCATTATCATTTCAATGGCCAGGTCAAACCCAAAGAAAGAGGTAGGATTTCTGAGTGATAGGAGGCGAATGAATGTGGCTGTGACACGAGCAAGGAGACAGTGTTGTCTTGTCTGTGACACGGAGACAGTGACCAGTGATAAGTTTTTGAAGCGATTAATTGAATATTTTGAGGAGAATGGAGAGTATTTAAGTGCTTCAGAGTATGGCCATGAATAA 1944 0.4331 MEGGKSNRKSSAISLQQFISTIAPLIDLEKDAEISGSISSGSLRNLDTAQKRGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFDDIPEEGLNSPLRLEKVANEVTYRRMKDALVQLSKGVHKGPTADLIPVLFGERPPTVSKKDVTFTPFNSNLDRSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGAKILACAASNIAVDNIVERLVPYRVKLVRLGHPARLLPQVLESALDAQVLRGDNTGLANDIRKEMKALNGKLLKTKDKNTRRDIRKELKTLSKEERKRQQLAVTDVIKNANVVLTTLTGAVSRKLENISFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLYGDEVMSMLTVQYRMHELIMNWSSKELYNSKITAHPSVAAHMLSDLEDVKKSSSTESTLLLIDTAGCDMEEKKDEEDSTMNEGEAEVAISHAKRLVDSGVQASDIGIITPYAAQVVLLKMMKNNDDKLKDMEISTVDGFQGREKEAIIISMARSNPKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVTSDKFLKRLIEYFEENGEYLSASEYGHE* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1596 647 Coils Coil 298 318 - -
Vvi8g1596 647 Gene3D - 41 143 - -
Vvi8g1596 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 646 - -
Vvi8g1596 647 SMART AAA_5 211 433 IPR003593 GO:0016887
Vvi8g1596 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 626 IPR027417 -
Vvi8g1596 647 CDD SF1_C_Upf1 445 633 IPR047187 -
Vvi8g1596 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 43 645 - -
Vvi8g1596 647 CDD DEXXQc_SMUBP2 196 444 - -
Vvi8g1596 647 NCBIfam IGHMBP2 family helicase 344 640 IPR004483 GO:0003677|GO:0005524
Vvi8g1596 647 Gene3D - 24 427 IPR027417 -
Vvi8g1596 647 SMART ultradead3 193 444 IPR014001 -
Vvi8g1596 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Vvi8g1596 647 Gene3D - 443 647 IPR027417 -
Vvi8g1596 647 Pfam AAA domain 420 616 IPR041679 -
Vvi8g1596 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1596 Vvi-Chr8 21501341 21513270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1596 170 380 Core DNA Replication Machinery Family AT1G08840 27.488 1.07e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1596 K19036 - vvi:100262429 1218.37