Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1589 ATGACTGACCCCTACTCAAAATTCTTCGCCGGTTGGTTCAAATTCAACCCTCTCCACCATTTCCCATCTGCAGAACCTCCATCACAGCCACCCTATGGCCACAGCTTGTACACCAATAGCTTCAGCAGCCACAGCAACTCCATTATCTATCAAACCCCGCCTCCATCTCCTCCTCTGAGAGAAGCCCTACCCCTTCTCAGTTTGAGCCCAACCAGGCATGAAGAAGACCAGCAGCAGCAACACTCCTCCTGCAGTAGTGCTATGGATGTGGATAGGAAGAAGAAAGCCAAAGAGGAAAGCTTCTTCTCATCTAGTACTAACACTAATACTGCTACTGATGATGGAGATGATGATGAAACTGTTACTGTTGCCCTACATATAGGTCTACCAAGCCCTAGTGCTGCAGAGATGGCCTCTATGCTCTCTTCTTCTTCAGAGATCACTGACAAAGATGGAGATGGTGATGTTTCTGGGTATCCCATCAACAGACTCAACAAGGGTCAGTATTGGATCCCCACCCCATCTCAGATCCTTATTGGTCCTACACAGTTCTCATGTCCTGTTTGCTGCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCTGAATCTCTAAGGGGCACTCAGCCAACGGGCATGCTTAGGCTTCCATGCTATTGCTGCGCACCAGGATGCAGGAACAATATAGACCACCCGAGGGCCAAGCCGCTTAAAGATTTTAGAACCCTTCAAACACATTACAAGAGGAAGCATGGGATCAAACCTTTCATGTGTAGAAAATGTGGGAAGGCATTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTACTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCTCTCAAGGACCACATAAAGGCTTTTGGGAATGGCCATGCAGCGTATGGCATAGATGGCTTTGAAGAAGAAGACGAACCTGCATCTGAAGTAGAACAAGATGATGAGTCCATGCAGTGA 1038 0.474 MTDPYSKFFAGWFKFNPLHHFPSAEPPSQPPYGHSLYTNSFSSHSNSIIYQTPPPSPPLREALPLLSLSPTRHEEDQQQQHSSCSSAMDVDRKKKAKEESFFSSSTNTNTATDDGDDDETVTVALHIGLPSPSAAEMASMLSSSSEITDKDGDGDVSGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDDESMQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1589 345 MobiDBLite consensus disorder prediction 95 116 - -
Vvi8g1589 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Vvi8g1589 345 SMART c2h2final6 184 206 IPR013087 -
Vvi8g1589 345 SMART c2h2final6 268 288 IPR013087 -
Vvi8g1589 345 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Vvi8g1589 345 SUPERFAMILY beta-beta-alpha zinc fingers 180 206 IPR036236 -
Vvi8g1589 345 MobiDBLite consensus disorder prediction 71 90 - -
Vvi8g1589 345 SUPERFAMILY beta-beta-alpha zinc fingers 250 288 IPR036236 -
Vvi8g1589 345 FunFam Zinc finger protein WIP2 237 319 - -
Vvi8g1589 345 PANTHER ZINC FINGER PROTEIN WIP2 33 342 IPR043584 GO:0003700|GO:0010468
Vvi8g1589 345 Gene3D Classic Zinc Finger 245 321 - -
Vvi8g1589 345 Gene3D Classic Zinc Finger 183 206 - -
Vvi8g1589 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 288 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1589 Vvi-Chr8 21424393 21426648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1589 1 345 C2H2 Transcription Factor Family AT3G57670 64.599 1.54e-154 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g1589 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1589 - - vvi:100255592 679.093