Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1579 ATGAATCTGCAAATGCAAGCAAAGCTTTGCCTCTTCTCTATATTGCATTTGAGCTTTGTTGCTTTTCTTGGGTTTTCCCTTCCATCTGTCTCTGTCTCTCTCTCTATCTATCTCTATTTTTGTTGGCCAGTAATCGCCTTTTCAATTATTATATTAGTGCTATGTCGCTTTTACTTGAGTTTGTCTTCCCACCTTTTTCTCATTTATGTTGTAATTAATATCATTTACTGTGGAATTAAGCTTTACTCAAGTTCGTCTCTTCCTACCTATAAGACCCCTCAAGGTTTCTGGAACTTCATTAGTCTCAAGAGTCATCCCTTGGAACCTTTTACGCCCGTAATTGTTGCTCCATGCACTCAAATTTCCCTTTTCTGTTTATTTTTGCTACAGAATTGTCATCCAATTGTCTTCATGGAGACGGAGGAAAGTGATACGAGGCTGAAAATGGAAGATTATGAAGTTATAGAGCAAATTGGAAGAGGAGCATTCGGTTCTGCCTTTCTTGTTCTCAACAAGACTGAGAAAAAGAAATATGTTCTAAAGAAGATTCGTGTGGCTAAGCAAACAGAGAAGTTCAAGCGTACAGCACACCAAGAGATGGAGCTGATTGCCAGACTAGATAACCCATATATAGTGGAATACAAGGATGCTTGGGTGGACAAGGGATGCTCTGTATGCATTGTGACTGGCTACTGTGAAGGAGGCGACATGGCTGGGGCCATAAAGAAGGCCAGAGGAGCATTGTTTCCAGAGGAGAAGCTCTGCAAGTGGCTGACTCAGTTGTTGCTAGCAGTGGACTATCTGCATTCAAACCGTGTCCTTCATAGAGATCTTAAGTGTTCCAACATATTCCTCACAAAGGAGAGCGACATCCGGCTTGGTGATTTTGGACTTGCAAAATTGCTCAGCACGGAAGACCTTGCTTCCTCGGTTGTGGGTACTCCCAACTACATGTGTCCTGAGCTTCTAGCAGATATACCTTATGGATACAAATCTGATATATGGTCACTAGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCAGCATTCAGAGCCCCTGATATGGCTGGACTAATCAACAAGATAAACAGATCCTCCATTTCTCCTCTCCCAATTGTATATTCCTCCACATTGAAACAGATTATCAAGAGTATGCTGCGGAAGAATCCAGAACACAGGCCAACTGCTGCAGAATTGTTAAGGCATCCTCATTTACAACCATACCTGGTCCGCTGCCGCAACACATCATCCATCTTTCTTCCTGTAAAGTCTGAGCACATTTCAAAGGATAAAACACCGAGAAAACCATCACCTATCAAACATAGTGCTGGAAAGGACAATAGAGACAAAGAGGGAAGAGTACTCAAAATGGCGGGTAGTGTTGAGCCATTGGAGGAAAATGCAAATGTTCAGCCAAGGAATCTACAGAACAAAGCAAAGCCAACACCCATAGTTCAAACTGAAGAAAACCTAGAGACCAAGAGAGTGGATCCTACAAGCTATCCTGAGGAAGTATCCAATGCTGTTGAGAGTTCAAAAGGTGGGTCTACAAGCTGTGCCACAACCATTACCAATGAAGATGAGCAGGTGAACGGTATCCTTTTAGCACAGAAGGAAAGCCTTGACACCGAAACTTCTACCGGGAGTACACCAAATTCTCAGCCTGGAGATGAAAAAGAACAAGACGAATCAGAATCCGCTCCCAAACATTTTGCGCAAATTCAAGATGGTGATATCAAGAATGTAACCTCAGAGGATGATGCAATGGAATCCAACACACAAGTTCCTGCAGGGGCTGAAACAGAGAGCAAGAGTCTTCAGCCTGGAAATCATGGGGCAATGGCAACATCCAGTGCCAACTCTACAGATAAAGGTGGCTCTCTTGATGATGAATCATCAAATTCATCATCAGCCACACAAGGTATTGAATATGAACCTAATGCAGAACCCAGTTGCTGTCTACAGAAAATGGAAAGCCCCGATTCCCAGGCAGAAGGCGGGGCTCAAATTGACTACATCTCATCAGAAAGCAACGACATACTCCCATGTAAGGATGAAGCAGGAGCAAAAACAGACAATACTAGTTGCTCCATGGTAATGGCGAAAGACGATATGAATACGATGAATAAAGCTCCAAGCGAAGTTTCATTGCTGAGCACACTGACTGCAGTTGGTGGAGATGAAACTAAAGGCGAATGGGATAACCCGAGCCAGCAGAGGGCCGACGCGCTAGAGTCCCTGCTTGAGCTATGTGCACGGCTGCTTCAACAGGACAAACTGGAAGAGCTTGCTGGTGTGCTGAAACCTTTCGGAGAAGAAGCTGTCTCGTCCAGAGAAACTGCAATTTGGTTGACAAAGAGCCTCATGACTGCACAAAAATTTCTTGGAGGAGCCTAA 2400 0.4383 MNLQMQAKLCLFSILHLSFVAFLGFSLPSVSVSLSIYLYFCWPVIAFSIIILVLCRFYLSLSSHLFLIYVVINIIYCGIKLYSSSSLPTYKTPQGFWNFISLKSHPLEPFTPVIVAPCTQISLFCLFLLQNCHPIVFMETEESDTRLKMEDYEVIEQIGRGAFGSAFLVLNKTEKKKYVLKKIRVAKQTEKFKRTAHQEMELIARLDNPYIVEYKDAWVDKGCSVCIVTGYCEGGDMAGAIKKARGALFPEEKLCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKESDIRLGDFGLAKLLSTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYLVRCRNTSSIFLPVKSEHISKDKTPRKPSPIKHSAGKDNRDKEGRVLKMAGSVEPLEENANVQPRNLQNKAKPTPIVQTEENLETKRVDPTSYPEEVSNAVESSKGGSTSCATTITNEDEQVNGILLAQKESLDTETSTGSTPNSQPGDEKEQDESESAPKHFAQIQDGDIKNVTSEDDAMESNTQVPAGAETESKSLQPGNHGAMATSSANSTDKGGSLDDESSNSSSATQGIEYEPNAEPSCCLQKMESPDSQAEGGAQIDYISSESNDILPCKDEAGAKTDNTSCSMVMAKDDMNTMNKAPSEVSLLSTLTAVGGDETKGEWDNPSQQRADALESLLELCARLLQQDKLEELAGVLKPFGEEAVSSRETAIWLTKSLMTAQKFLGGA* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1579 799 MobiDBLite consensus disorder prediction 468 490 - -
Vvi8g1579 799 Gene3D Phosphorylase Kinase; domain 1 133 231 - -
Vvi8g1579 799 ProSitePatterns Protein kinases ATP-binding region signature. 158 187 IPR017441 GO:0005524
Vvi8g1579 799 SUPERFAMILY Protein kinase-like (PK-like) 149 432 IPR011009 -
Vvi8g1579 799 MobiDBLite consensus disorder prediction 425 667 - -
Vvi8g1579 799 MobiDBLite consensus disorder prediction 505 556 - -
Vvi8g1579 799 MobiDBLite consensus disorder prediction 425 457 - -
Vvi8g1579 799 MobiDBLite consensus disorder prediction 587 645 - -
Vvi8g1579 799 Pfam Protein kinase domain 152 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1579 799 FunFam Serine/threonine-protein kinase Nek6 138 231 - -
Vvi8g1579 799 SMART serkin_6 152 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1579 799 CDD STKc_Nek 151 406 - -
Vvi8g1579 799 FunFam serine/threonine-protein kinase Nek6 isoform X2 232 420 - -
Vvi8g1579 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Vvi8g1579 799 Gene3D Transferase(Phosphotransferase) domain 1 232 420 - -
Vvi8g1579 799 ProSiteProfiles Protein kinase domain profile. 152 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1579 799 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 149 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1579 Vvi-Chr8 21367807 21372343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1579 156 409 MAP Kinase Kinase Kinase AT3G06030 31.481 8.82e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vvi8g1579 Pkinase 5.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1579 K08857 - vvi:100246952 1300.8