Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1578 ATGGGGAAGAAAAAGAAAACTAGAGTTTCTGATAACATCGCCGAAGAAAAAGAGTATGTTGGTCAGTCTTCCAAAGAAGAAGAGTATGTTAGTCAGTCTTCCACAAACGAGAGGAGCCTGTACGAGGTTCTTGGTGTGGAAAAGACGGCATCTCAGCAGGAAATTAAGAAAGCTTACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGTGATGAAGAGAAAAGGGCACTCTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCTGGTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATTCAAGGATATTCTTGATGAGGCAATATCAGCAGGAGAGCTGAAGGCAACCAAAGTCTACCAGAAATGGGCAAAACAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGAAGTGAAAGGAAAGACCGTTTTGATTCAATGTTCTCATCTCTGGTGTCTAAATATGGTGGGAGTGGACAAGTTTCAGAACCCACTGAAGAAGAATTTGAGGCCACACAAAGAAAGTTAGAGAGCCTCAAGGCATCCAAAAAGTCCAAGCGGAAGTAA 876 0.4064 MGKKKKTRVSDNIAEEKEYVGQSSKEEEYVSQSSTNERSLYEVLGVEKTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGEVVQNLHEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAISAGELKATKVYQKWAKQVSEAKPPTSPLRKRGKSNKESESDLLAIISQRRSERKDRFDSMFSSLVSKYGGSGQVSEPTEEEFEATQRKLESLKASKKSKRK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1578 291 MobiDBLite consensus disorder prediction 206 291 - -
Vvi8g1578 291 Coils Coil 272 291 - -
Vvi8g1578 291 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 26 291 IPR042977 -
Vvi8g1578 291 Gene3D DnaJ domain 22 118 IPR036869 -
Vvi8g1578 291 PRINTS DnaJ domain signature 96 115 IPR001623 -
Vvi8g1578 291 PRINTS DnaJ domain signature 76 96 IPR001623 -
Vvi8g1578 291 PRINTS DnaJ domain signature 41 59 IPR001623 -
Vvi8g1578 291 PRINTS DnaJ domain signature 59 74 IPR001623 -
Vvi8g1578 291 SUPERFAMILY Chaperone J-domain 35 121 IPR036869 -
Vvi8g1578 291 SMART dnaj_3 38 96 IPR001623 -
Vvi8g1578 291 MobiDBLite consensus disorder prediction 1 24 - -
Vvi8g1578 291 ProSiteProfiles dnaJ domain profile. 39 104 IPR001623 -
Vvi8g1578 291 MobiDBLite consensus disorder prediction 236 250 - -
Vvi8g1578 291 MobiDBLite consensus disorder prediction 1 33 - -
Vvi8g1578 291 CDD DnaJ 41 93 IPR001623 -
Vvi8g1578 291 Pfam DnaJ domain 40 101 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1578 Vvi-Chr8 21361222 21365884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1578 30 101 C2H2 Transcription Factor Family AT1G74250 40.260 1.05e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1578 K09529 - vvi:100265910 546.969