Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1575 ATGGCTAGCTTCTGCACATATCCTCTGTTCTTCTCTTTGACCTTCGCATTCTTCATCGTGGCCTCTGCTTCATCTGAAGCAGAGATCCTTCTCACATTTAAGGCCTCCATTGAAGACCCCATGAAGTATCTCTCCACATGGTCCAACACTTCTGAGACTCACCACTGTAACTGGACTGGAGTCACCTGCACCACCACACCACCTCTCTCTGTCACCTCTCTCAACCTTCAGAGCCTGAACCTCTCTGGGGAAATCTCTGCTTCTCTGTGTGGACTCCACAATCTCTCTTACCTTAACCTTGCTGACAATCTCTTCAACCAACCCATTCCTCTCCATCTCTCCCAGTGCAGTTCTTTGGAGACTTTGAATCTCAGTAACAATCTCATTTGGGGTACAGTCCCAGAGCAAATTTCTCAGTTTGGTTCATTGAGAACGCTTGATTTCAGCAGAAACCACGTTGAAGGGAAGATCCCAGAAACCATAGGGTCACTGAAGAATCTGCAAGTTCTCAACTTGGGAAGCAACTTGCTTTCAGGTAGTGTTCCTTCTGTTTTTGGGAATTTCACTGAGCTTCTTGTTCTTGATTTGTCTCAAAATCGATTTTTGGTGAGTGAGATTCCTGGTGGCATTGGCAAGCTTGAGAAGCTTAAGCAGCTTCTACTCCAAAGCTCTGGTTTTTATGGTGAGATTCCTCAATCCTTTGCTGGCTTGCAGGGGTTAACCATTTTGGACCTCTCTCAGAACAATCTGACTGGTGGGGTACCTCAGACACTAGGAGCTTCTCTTAAGAACTTGGTATCTTTTGATGTTTCACAAAACAACCTTCTGGGTTCATTTCCCACTGGCATATGCCGAGGAAAAGGCCTCATAAACCTCAGCCTCCATACAAATTCCTTCAGTGGTTCAATACCCAACTCCATTAGTGAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCTGGTGATTTCCCAAATGGGTTATGGTCATTACCCAAAATCAAGCTCATTAGAGCTGAAAACAACAGATTTTCTGGGGAAATACCGGATTCCATATCAGTGGCTGCTCAGTTGGAGCAAGTTCAGATTGATAACAACAGCTTCACTAGTAAAATTCCTCAGGGCCTTGGGTCAGTCCGGAGCTTATATAGATTTTCTGCATCTCTTAATGGCTTCTATGGTGAACTTCCTCCAAATTTCTGTGACTCACCAGTTATGAGTATAATAAATCTCTCCCACAATTCGCTCTCTGGTCTAATTCCAGAGTTGAAGAAATGCCGGAAATTAGTCTCATTGTCTCTGGCGGACAACAGTCTTGTTGGGCAAATCCCTGCATCCCTCGCTGAATTACCTGTGCTCACTTACCTTGACCTTTCGGATAATAATCTCACTGGTTCAATTCCACAGGAGCTTCAAAACTTGAAACTTGCTCTCTTTAATGTATCCTTCAACCACCTCTCCGGAAAGGTTCCATTCCCTTTGATCTCCGGCCTTCCGGCTTCATTTCTGCAAGGAAATCCGGAACTTTGTGGCCCAGGATTACCCAATTCTTGTTATGATGATGAGCCCATACATAAGGCTGGTGGTCTTACAAAATTAGCATGTGCCCTCATCTCTCTGGCTCTTGGTGCTGGAATTTTGATCATTGCAGCTGGGTTCTTTGTGATTTATCGGACTTCCCAGCGGAAATCTCAAATGGGTGTCTGGAGATCAGTTTTCTTCTACCCCCTTAGAGTCACAGAGCATGACTTGATCATGGGAATGGATGAGAAAAGCGCGGTAGGAAGTGGTGGAGCTTTTGGTAGAGTTTACATCATAAGCTTACCAAGTGGTGAGCTTGTGGCTGTCAAGAAGCTTCTCAATCCTGGGAGCCAGTCTTCAAAATCACTGAAGAATGAAGTAAAGACATTGGCCAAGATCAGGCATAAGAACATAGTCAAACTTCTGGGGTTCTGCCACTCCAGTGACTCTATCTTTCTGATATATGAGTTTCTGCAGAAGGGGAGCTTGGGGGATTTGATATGCAGACCAGATTTTCAGTTTCAATGGAGTACTAGATTGAGGATTGCCATTGGGGTTGCTCAAGGATTAGCATATCTTCACAAGGACTATGTTCCACATATACTTCACAGAAACCTCAAGTCCAAAAACATCCTTCTGGATGCAGATTTGGAACCAAAGCTCACGGATTTCGCTCTGGATCGGATTGTGGGAGAAACTGCATTTCAATCGACCATGGCTTCAGAATCTGCTTTCTCATGTTACATTGCACCAGAAAATGGATACAGCAAGAGAGCCACAGAACAAATGGATGTGTACAGCTTTGGTGTTGTGCTGCTAGAGCTCGTGACAGGCCGGCAAGCCGAGCAAGCAGAATCAGCAGAGTCTATTGATATTGTGAAGTGGGTTAGACGGAAAATCAACATTACCGATGGAGCTCTCCAAGTTCTTGACCCCAAGATTTCAAACTCTTCACAGCAAGAGATGCTGGGTGCTCTGGAAATGGCCCTGAGATGCACCTCTGTAATGCCTGAGAAAAGGCCGACCATGTTTGAAGTTGTGAGAGCACTTCAATCCCTCAGCTCAAAGACCCCCACATCCCAGATTTGGAGTTGTCCATTGGAACTTCAGATGAGCATTCATCAGCTCCAATCTGATGAACACTAA 2676 0.4492 MASFCTYPLFFSLTFAFFIVASASSEAEILLTFKASIEDPMKYLSTWSNTSETHHCNWTGVTCTTTPPLSVTSLNLQSLNLSGEISASLCGLHNLSYLNLADNLFNQPIPLHLSQCSSLETLNLSNNLIWGTVPEQISQFGSLRTLDFSRNHVEGKIPETIGSLKNLQVLNLGSNLLSGSVPSVFGNFTELLVLDLSQNRFLVSEIPGGIGKLEKLKQLLLQSSGFYGEIPQSFAGLQGLTILDLSQNNLTGGVPQTLGASLKNLVSFDVSQNNLLGSFPTGICRGKGLINLSLHTNSFSGSIPNSISECLNLERFQVQNNGFSGDFPNGLWSLPKIKLIRAENNRFSGEIPDSISVAAQLEQVQIDNNSFTSKIPQGLGSVRSLYRFSASLNGFYGELPPNFCDSPVMSIINLSHNSLSGLIPELKKCRKLVSLSLADNSLVGQIPASLAELPVLTYLDLSDNNLTGSIPQELQNLKLALFNVSFNHLSGKVPFPLISGLPASFLQGNPELCGPGLPNSCYDDEPIHKAGGLTKLACALISLALGAGILIIAAGFFVIYRTSQRKSQMGVWRSVFFYPLRVTEHDLIMGMDEKSAVGSGGAFGRVYIISLPSGELVAVKKLLNPGSQSSKSLKNEVKTLAKIRHKNIVKLLGFCHSSDSIFLIYEFLQKGSLGDLICRPDFQFQWSTRLRIAIGVAQGLAYLHKDYVPHILHRNLKSKNILLDADLEPKLTDFALDRIVGETAFQSTMASESAFSCYIAPENGYSKRATEQMDVYSFGVVLLELVTGRQAEQAESAESIDIVKWVRRKINITDGALQVLDPKISNSSQQEMLGALEMALRCTSVMPEKRPTMFEVVRALQSLSSKTPTSQIWSCPLELQMSIHQLQSDEH* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1575 891 ProSiteProfiles Protein kinase domain profile. 592 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1575 891 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 862 - -
Vvi8g1575 891 Gene3D Ribonuclease Inhibitor 186 260 IPR032675 -
Vvi8g1575 891 SUPERFAMILY L domain-like 25 299 - -
Vvi8g1575 891 Pfam Protein kinase domain 594 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1575 891 SUPERFAMILY Protein kinase-like (PK-like) 600 880 IPR011009 -
Vvi8g1575 891 Gene3D Ribonuclease Inhibitor 261 529 IPR032675 -
Vvi8g1575 891 FunFam Leucine-rich repeat family protein 25 182 - -
Vvi8g1575 891 ProSiteProfiles Leucine-rich repeat profile. 455 478 IPR001611 GO:0005515
Vvi8g1575 891 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vvi8g1575 891 SUPERFAMILY L domain-like 204 517 - -
Vvi8g1575 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 668 868 - -
Vvi8g1575 891 Pfam Leucine rich repeat 430 489 IPR001611 GO:0005515
Vvi8g1575 891 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Vvi8g1575 891 Pfam Leucine rich repeat 215 275 IPR001611 GO:0005515
Vvi8g1575 891 Gene3D Phosphorylase Kinase; domain 1 585 667 - -
Vvi8g1575 891 Gene3D Ribonuclease Inhibitor 22 184 IPR032675 -
Vvi8g1575 891 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 582 667 - -
Vvi8g1575 891 Gene3D Transferase(Phosphotransferase) domain 1 668 874 - -
Vvi8g1575 891 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 261 524 - -
Vvi8g1575 891 SMART LRR_typ_2 117 140 IPR003591 -
Vvi8g1575 891 SMART LRR_typ_2 262 286 IPR003591 -
Vvi8g1575 891 SMART LRR_typ_2 188 213 IPR003591 -
Vvi8g1575 891 SMART LRR_typ_2 164 187 IPR003591 -
Vvi8g1575 891 SMART LRR_typ_2 453 476 IPR003591 -
Vvi8g1575 891 SMART LRR_typ_2 92 116 IPR003591 -
Vvi8g1575 891 SMART LRR_typ_2 237 261 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1575 Vvi-Chr8 21345948 21348717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1575 30 863 Receptor kinase-like Gene Family AT5G06940 65.476 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi8g1575 Pkinase 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1575 - - vvi:100248724 1645.94