Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1574 ATGGAAAGTGATCACACAGATTTGAATGGCAAGAAGAGTACTGGGAGGGTTAATAATATAGGCATTGTTGAAGGAAGCCCAGAAAATCCAACTGAACCAGTAGTACTGATGCAATACATCCAGGACAAGCTAGGTGTATATCGACAAGAACATGAGGCAGCTCGGGCTTATGATTTAGCTGCCATTAAGTTCTGGGGCAGATCAGTCCCCACAAATTTCCCGCTAAGTAATTATCAGAAGGAAATGGAGGTGATGAAGGACATGTCGAAAAAAGATTATCTGGTAGCCCTTAGAAGGAATGCTGACGGCGAGAAATGGCAAGCAAGGTTAGGTAGAGGCAAAGGATTGCGAGGCATTTACTTAGGGACATTCAAGACCGAAGATGAAGCAGCTAGGGCTTATGACATTGCTTCGATAAGGCTTAATGGCATGGAGGCAATTACCAATTTTGATCTTGGTCAGTACAATGTCATGAGCATACTGGCAAGTAATAAGCTCCCGATTGGTGAAGGTGCTTCAAAGTACGTAAAAAATACTTCAGTGGATGAAGTTCTTTCAAAGAGGAAGGCAAAGAAGGTACCGGACGTGCCGGAAGATGGAAACTCGAGAAGCCCCCAGCCTGACCCTGAAGTTCAACCATCTGACGAGCAGATTCAGAATCTAACAGCCCCGGGACAGCAAAATCTTCAATTTCATCGGAGTTACACTTCTGCCAACCATGGCCAACATCTAGACCATCAAAACCCTAGCTCCTCCCTTCTTCGTGCCCATGAAAACCCTAATTTTCAAACCAACCCCAATTCTGCCCATGGATTTGGTAGTGGGATTCAGCAACTAAACCCAGTTGAACAAACGCCGATTCAACCAGCCCCAGAGAACCAGTATCTTCGGTTCCGGCAAAATCACAGTCGTATCAACCAGGTCCAGGATCAAAACCCTAGCTCCTTCCTTCTTGGTGGCTACCAAAACCCTAACTTTCAACCTATCCATAATTTTCTTGGGTTTACTAGCACTGGTAGTGGGATGACAACCAGTGGGAATTTGGGGCGATTTTCTACTATTCACGGAGCTGGTAAGACTTACAGCTTTGGACTTATGAGGGGGATTTCACCATTGCCACCATCTCAACAGTTTCAGACCCTACCAACCCCGCAGTACGAAAACTTTTTCCTCGACGCCCTGGAGCAAAACCCTAGATTCTTCGGGCTCCGTGGTATCCAAAACCCTCCTCCTCAGCCCAGCCCTGGTTTCTTTGATGGATTGACTAGCCCTGCAAGGGGAACCAGAACCAACGCCGATTTCAACGGGCGGAGGAGCTGGATGTTGGAGGGGAATACAACAGTGACTGTAACTGGAAATAATTCTACTGATATGGCAGGTGGCGTGGTGCAAACAAATGGAACTACTGTTGGAGAAGACTTGGCCCCGGAAAATGCAGAAGATGGATGGTGGATTGAAGATTTTCCAGCAGACAAAACTGAGTTTGATGTCCCTTCCAGCTCAGTTAAGAGTTTCTCAGCAGACCCAAGCCGTCCTGGTCTCAATATGTAA 1551 0.4662 MESDHTDLNGKKSTGRVNNIGIVEGSPENPTEPVVLMQYIQDKLGVYRQEHEAARAYDLAAIKFWGRSVPTNFPLSNYQKEMEVMKDMSKKDYLVALRRNADGEKWQARLGRGKGLRGIYLGTFKTEDEAARAYDIASIRLNGMEAITNFDLGQYNVMSILASNKLPIGEGASKYVKNTSVDEVLSKRKAKKVPDVPEDGNSRSPQPDPEVQPSDEQIQNLTAPGQQNLQFHRSYTSANHGQHLDHQNPSSSLLRAHENPNFQTNPNSAHGFGSGIQQLNPVEQTPIQPAPENQYLRFRQNHSRINQVQDQNPSSFLLGGYQNPNFQPIHNFLGFTSTGSGMTTSGNLGRFSTIHGAGKTYSFGLMRGISPLPPSQQFQTLPTPQYENFFLDALEQNPRFFGLRGIQNPPPQPSPGFFDGLTSPARGTRTNADFNGRRSWMLEGNTTVTVTGNNSTDMAGGVVQTNGTTVGEDLAPENAEDGWWIEDFPADKTEFDVPSSSVKSFSADPSRPGLNM* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1574 516 CDD AP2 98 151 IPR001471 GO:0003700|GO:0006355
Vvi8g1574 516 ProSiteProfiles AP2/ERF domain profile. 10 74 IPR001471 GO:0003700|GO:0006355
Vvi8g1574 516 Gene3D AP2/ERF domain 24 76 IPR036955 GO:0003700|GO:0006355
Vvi8g1574 516 Gene3D AP2/ERF domain 95 152 IPR036955 GO:0003700|GO:0006355
Vvi8g1574 516 MobiDBLite consensus disorder prediction 186 215 - -
Vvi8g1574 516 MobiDBLite consensus disorder prediction 239 277 - -
Vvi8g1574 516 ProSiteProfiles AP2/ERF domain profile. 92 151 IPR001471 GO:0003700|GO:0006355
Vvi8g1574 516 MobiDBLite consensus disorder prediction 497 516 - -
Vvi8g1574 516 MobiDBLite consensus disorder prediction 494 516 - -
Vvi8g1574 516 SUPERFAMILY DNA-binding domain 102 152 IPR016177 GO:0003677
Vvi8g1574 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 245 - -
Vvi8g1574 516 SUPERFAMILY DNA-binding domain 43 76 IPR016177 GO:0003677
Vvi8g1574 516 SMART rav1_2 38 80 IPR001471 GO:0003700|GO:0006355
Vvi8g1574 516 SMART rav1_2 98 157 IPR001471 GO:0003700|GO:0006355
Vvi8g1574 516 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1574 Vvi-Chr8 21339773 21342690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1574 41 189 AP2-EREBP Transcription Factor Family AT1G51190 46.988 1.21e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1574 K09285 - vvi:104880175 939.102