Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1568 ATGGAGCGAATTGCAGGAACCGGAGGTAGATCCGGGAGTACCGGAGGCGAGAAGGAGGAAATCGGAGCTGAGTCGTTCCTATTTGGCGAGGAAATTCAAAGACTGATGACTGGTCCGCCGGAGAATGGAAGCTCCTTCACGGCACTCCTCGGACTTCCGGCGAATCAAGCCATGGAGCTCTTGCACTCGCAGGAATCTGACACAGCTCCCGCCGAACTCTCCGGCGAGGCGTGGAGAGATAACCATATGAATCCTCACAAACTCTACTACTGTTCCCCGACATTTCCGGCGAACACCACTCTCATCGACCGCGCCGCGAGGTTCTCCGTCTTCGCCGCCGGCGAAAACTCGCCGGAAACTAGCTCAGTCCCGTCGAATTCCTCGCACAAAGTTAAGAATGAACCCACTGATACAGACTCGAACCCTAATTCATTACCGCCGTTGATCTCCAATCCAACGGTTGAGAACAAGAATCAGCGATCAACGAAGCGAAAGGAGCGAGAGAAGAAGGCCAAAGGGTCGACGAAAAAGTGCAAAAACGCATCGAATGAGACCTCCGAAGAGGCCGAGAAGCTTCCGTACGTTCACGTTCGAGCTCGTCGCGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATTAACGCCCGGATGAAGCTTCTTCAAGAGCTGGTCCCTGGTTGTAATAAGATTTCAGGTACAGCTTTAGTGCTGGATGAAATTATCAGCCACGTACAATCCCTACAACGCCAAGTAGAGTTCTTATCTATGAGACTTGCGGCAGTAAACCCGAGAATTGATTTCAACCTTGACAGTTTATTGGCTCCAGAAAGTGGATCTCTGGTCGACAGTAACTTCCCTAGCATGGTCATGCCACTGATGTGGCCAGATGTCCAAGCCAATGAAAACAGACAACCTTATCAACAGCTATGGAATGATGACACACTTCACCAGCCAGTTTGGGGAAGGGAAGAGGACGACCCCCATAATTTCATTGCTCCAGAGCACTCGCTTTTGAGTTATGACTCCTCGGCAAATTCAGGGTCTCTGCAGTCAAACCAGCTGAAAATGGAGCTGTGA 1095 0.5105 MERIAGTGGRSGSTGGEKEEIGAESFLFGEEIQRLMTGPPENGSSFTALLGLPANQAMELLHSQESDTAPAELSGEAWRDNHMNPHKLYYCSPTFPANTTLIDRAARFSVFAAGENSPETSSVPSNSSHKVKNEPTDTDSNPNSLPPLISNPTVENKNQRSTKRKEREKKAKGSTKKCKNASNETSEEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIISHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLLAPESGSLVDSNFPSMVMPLMWPDVQANENRQPYQQLWNDDTLHQPVWGREEDDPHNFIAPEHSLLSYDSSANSGSLQSNQLKMEL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1568 364 MobiDBLite consensus disorder prediction 173 190 - -
Vvi8g1568 364 MobiDBLite consensus disorder prediction 115 190 - -
Vvi8g1568 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 253 IPR011598 GO:0046983
Vvi8g1568 364 SMART finulus 209 259 IPR011598 GO:0046983
Vvi8g1568 364 Gene3D - 200 272 IPR036638 GO:0046983
Vvi8g1568 364 MobiDBLite consensus disorder prediction 1 20 - -
Vvi8g1568 364 FunFam transcription factor bHLH48-like isoform X1 200 272 - -
Vvi8g1568 364 Pfam Helix-loop-helix DNA-binding domain 207 254 IPR011598 GO:0046983
Vvi8g1568 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 272 IPR036638 GO:0046983
Vvi8g1568 364 CDD bHLH_AtBPE_like 193 278 - -
Vvi8g1568 364 MobiDBLite consensus disorder prediction 115 157 - -
Vvi8g1568 364 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 109 317 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1568 Vvi-Chr8 21302990 21308114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1568 1 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 55.051 6.02e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi8g1568 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1568 - - vvi:100241856 701.819