Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1564 ATGTTGTTGTTCAGAGCTGAACTTGGGCTTGCTTCTTTTCTTATCTTCTTCACTTGTCTTTCTTCTTCTCTCAACTCTGATGGCCTCTCCCTTCTCGCATTGAAAGCGGCCATTGTCAGCGATCCAACTGGAGTCCTTGACACATGGTCCGAGTCTGACTTGGTTCCGTGTCACTGGGGTGGGATCTCCTGCACTCACGGCCGAGTCACCGGGGTTTTTCTTCCCAACAGAAGCTTCACCGGCTACATTCCGTCTGAGCTCGGAGCTCTGGTCAATCTTCGCCAGCTTAGTCTGGCTAATAACAACTTCTCTAAACCCATTCCTTCTCGGCTCTTCAATGCCACCACTCTTCTCTCTCTAGACCTCTCTCACAACTCTCTCTCTGGTCCACTCCCGACCCAAGTCAAAGCCCTCAAATACCTAGTGCACTTGGATCTTTCTTCGAATCTCCTCAATGGGTCACTCCCTGAAGAGCTAGCCGAGCTGGAGAACCTCGCCGGAAGTTTGAATCTGTCACACAACCGGTTTTCCGGCGAGGTGCCCGCTTCGTATGGGAAGATTCCTTTGATGGTCAGCTTGGATCTCCGGCACAACAACCTCACTGGAAAGATTCCACAGATCGGGTCTCTTTTGAATCAGGGTCCCACAGCTTTCTCTGGAAACCCGAGTCTCTGCGGCTTTCCTCTGCAAACTCCATGCCCAGAGGCTTCAAACCCCAAAATCTTTGTAAACCCAGAAAACCCCAGAAAACCTAACCCTAGTTTTCCAAATGGCGCCGCCGATGAAGGCGAAGAAAGACAAAAAATAGGAGGCGGGTCGGTGGCCGTACCGCTAATTTCGGGCATTTCGGTCGTGGTTGGTGTGGTATCGGTATCGGTGTGGCTGTTCCGGAAAAAACGGAGCTCAGGTGAGGGTAAAATAGGAAGAGAAAAATTGGCGAAGGAGGTGGAAGATGAAGGGCAAAAAGGTAAATTCGTGGTGGTCGATGAGGGGTTTGGATTGGAATTAGAAGATTTGTTGAGGGCATCAGCGTACGTGGTGGGAAAAAGCAGGAGTGGGATAGTGTACAGGGTGGTGGCCGGGAGGGTATCAGGTGCATCGCCCACAGTTGTTGCTGTGAGGCGCCTCAGCGAAGGCGACGGCACGTGGCGCCTCAAGGACTTTGAATCCGAAGTGGAGGCCATTGCAAGGGTCCACCACCAAAACATCGTACGATTGAGAGCTTATTACTACGCAAACGATGAGAAACTACTAGTCTCTGATTTCATCCGCAACGGTAGCCTACATACCGCGCTGCACGGTGGGCCTTCCAATACATTGCCACCCTTGTCATGGGCAGCAAGGTTGAAGATTGCTCAAGGCGCTGCAAGGGGTCTAATGCACATCCATGAATGCAGCCCTCGGAAATACGTCCATGGGAACATAAAATCATCCAAAATCCTTCTTGACGATCATCTTCAACCTTACGTCTCTGGTTTTGGGCTCACCCGACTAGTCTCAGGAGCCTCCTCCAAGAAGCAGAACTCACACCAAGTCAGCACCAACTCTGTACTGGGCTCTAAAGCTTCAGCCAACTCTATCGCCTACTTAGCACCCGAGGCTCGTGTCTCCGGCACCAGGTTCACCCAGAAATGTGATGTCTACTCCTTTGGCATCGTCCTTATGGAGGTTCTAACTGCTCGGCTACCAGACGCCGGACCTGAGAACGATGGTAAAGGATTGGAAAGCCTTGTGAGGAAGGTTTTTCGGGATGAACGGCCATTGTCTGAGATCATAGACCCAGCACTGTTGCATGAGGTATATGCCAAGAAACAAGTTTTATCTGCATTCCATGTTGCTCTCAACTGCACAGAGCTGGACCCGGAGCTGCGGCCGAGGATGAGAACGGTTTCTGAGAGCCTTGACCGCATCAAATCACAATGA 1923 0.5127 MLLFRAELGLASFLIFFTCLSSSLNSDGLSLLALKAAIVSDPTGVLDTWSESDLVPCHWGGISCTHGRVTGVFLPNRSFTGYIPSELGALVNLRQLSLANNNFSKPIPSRLFNATTLLSLDLSHNSLSGPLPTQVKALKYLVHLDLSSNLLNGSLPEELAELENLAGSLNLSHNRFSGEVPASYGKIPLMVSLDLRHNNLTGKIPQIGSLLNQGPTAFSGNPSLCGFPLQTPCPEASNPKIFVNPENPRKPNPSFPNGAADEGEERQKIGGGSVAVPLISGISVVVGVVSVSVWLFRKKRSSGEGKIGREKLAKEVEDEGQKGKFVVVDEGFGLELEDLLRASAYVVGKSRSGIVYRVVAGRVSGASPTVVAVRRLSEGDGTWRLKDFESEVEAIARVHHQNIVRLRAYYYANDEKLLVSDFIRNGSLHTALHGGPSNTLPPLSWAARLKIAQGAARGLMHIHECSPRKYVHGNIKSSKILLDDHLQPYVSGFGLTRLVSGASSKKQNSHQVSTNSVLGSKASANSIAYLAPEARVSGTRFTQKCDVYSFGIVLMEVLTARLPDAGPENDGKGLESLVRKVFRDERPLSEIIDPALLHEVYAKKQVLSAFHVALNCTELDPELRPRMRTVSESLDRIKSQ* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1564 640 FunFam Leucine-rich repeat receptor-like protein kinase 143 235 - -
Vvi8g1564 640 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Vvi8g1564 640 MobiDBLite consensus disorder prediction 243 267 - -
Vvi8g1564 640 FunFam Leucine-rich repeat receptor-like kinase 29 142 - -
Vvi8g1564 640 ProSiteProfiles Protein kinase domain profile. 341 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1564 640 Gene3D Ribonuclease Inhibitor 167 233 IPR032675 -
Vvi8g1564 640 Pfam Protein tyrosine and serine/threonine kinase 347 633 IPR001245 GO:0004672|GO:0006468
Vvi8g1564 640 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 638 IPR046959 -
Vvi8g1564 640 SUPERFAMILY L domain-like 26 230 - -
Vvi8g1564 640 Gene3D Phosphorylase Kinase; domain 1 314 422 - -
Vvi8g1564 640 Gene3D Transferase(Phosphotransferase) domain 1 423 640 - -
Vvi8g1564 640 SUPERFAMILY Protein kinase-like (PK-like) 346 634 IPR011009 -
Vvi8g1564 640 Gene3D Ribonuclease Inhibitor 27 166 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1564 Vvi-Chr8 21253365 21259257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1564 24 640 Receptor kinase-like Gene Family AT3G57830 63.240 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi8g1564 PK_Tyr_Ser-Thr 3.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1564 - - vvi:100262317 1209.13