Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1563 ATGTATAATGTTTCTCAAGCTTCTCCCCATGACATGAGTCTTATGTACTCCTCCAATTTCAAGCACTCTGGAGAAGAAGAAACGGAGAAAACCAGAGCTGTATTCATGGATTCAAATACGAATTACCATCACCAGCAAAACCAGAATCAACCACCCAACTCCGGCCTTCTGCGGTTTCGCTCGGCGCCGAGCTCGCTTCTCGCGAATTTCACGGACAGTGGAGATGGTGTTCACAAGGGAGCTAATCTTTGTGACGATTTTGAATCGGAGAGGTTCATGCCGTGTGGGGGTTTTCAAGATTCGGCTATGAGTTGTCAGAGTCAGTTGCCGCCGCAGTATCCGAGGCAAAGCTCAAGTACGAGTTCGTCTGCCATGGATGGCTCATATGGGGTTGTGAATTCCAACAACATGGAAGCCAAACAGGGTTCGAGTCTTGTCAGGCAAAGTAGCTCTCCTGCTGGGCTTTTCTCTCACCTTTCGGGTCAGAATGGCTATGCCATTATGAGAGGTGTGGGAAACTTTAGACCTGGGAATGTTGGTAATGGAGAAATCAGCCCATCAACTAGCAGGTTGAAGCCTCAAGTTAGCTTCTCTTCTGGATTACCTTCTTCCTTGGGACTATTGCCTCAGATCTCTGAAATTGGAAGTGAGTGCATTCAGGCAAGCAGTCCCAATGACAGGAAACTGGCAAATAGCAATGGTGATGCTCGATTTTACAGCCCTGGATTCCCATATGGCTCTTGGAATGATTCTGCCCATTTTGAGAACTTCAGTGGCATGAAAAGGGACCAAGACAATGATGGGAAGTTGTATTCTGGTTCAAATACATCTGGTATTCGGAATGAGGAGTTTGGACATCGCTCTCAAATCTTGTCCCACCACCTAAGTTTGCCAAAGACTTCAGCTGAGATGGCTGCCATGGAGAAGTTCCTTCAGTTCCAAGACTCTGTTCCTTGTAAGATTCGTGCAAAGCGGGGTTGTGCTACTCATCCAAGAAGCATCGCTGAAAGGGTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATACACTTACTGATAATCGTGCACACTGCAAGTGTTTAGGTAAGCAGAAACCGGTCCCAAATCAAACTGTTTGA 1218 0.4647 MYNVSQASPHDMSLMYSSNFKHSGEEETEKTRAVFMDSNTNYHHQQNQNQPPNSGLLRFRSAPSSLLANFTDSGDGVHKGANLCDDFESERFMPCGGFQDSAMSCQSQLPPQYPRQSSSTSSSAMDGSYGVVNSNNMEAKQGSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSSGLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSWNDSAHFENFSGMKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1563 405 MobiDBLite consensus disorder prediction 103 135 - -
Vvi8g1563 405 CDD bHLH_AtbHLH_like 332 384 IPR045239 -
Vvi8g1563 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 392 - -
Vvi8g1563 405 FunFam Transcription factor bHLH130 family 328 397 - -
Vvi8g1563 405 Pfam Helix-loop-helix DNA-binding domain 332 378 IPR011598 GO:0046983
Vvi8g1563 405 Gene3D - 328 398 IPR036638 GO:0046983
Vvi8g1563 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 391 IPR036638 GO:0046983
Vvi8g1563 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Vvi8g1563 405 SMART finulus 333 383 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1563 Vvi-Chr8 21244593 21246731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1563 36 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.532 5.82e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi8g1563 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1563 - - vvi:100267478 780.785