Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1556 ATGGCTGATGTCCAAGACCACGTCATTCTGTTCCTCATCTGGCTCATATCTTTCATCCTGGCCCGAGCCTTGTTCACAAAATACCGGACCAGGGTGCGACGTCCACCGGGCCCACTAGCACTACCTATCATCGGACACTTCCACCTCCTTGGCTCAAAACCTTACCAATCCCTTCACAAACTCTCACTCCGCTATGGACCGCTTTTTCAATTCTACTTTGGTTCCATCCCTAGTGTGGTAGTTTCCTCCGGGGAGATGGCAAAAGAGTTTCTCCAAACCCATGACATTTCATTTGCCAACCGACCCAAACTCAGCAATATTGATTATCTATTCTATGGCTCAAATGATATTGCCTTTGCTTCATATGGACCCTATTGGAAATTCATGAAAAAACTTTCTATGACCAAACTTCTAGGTGTCCAAACACTAGATAAATTTGTCCCAGTTATGAGAGAAGAGAGACATCTATTTTTGCAGACACTACTGGGAAAAGCTGAAGCAGGTGAGGCGGTTGATGTAAAGAAAGAGATTATGAGGCTAACAAACAACTTAATAACAAAAATGATCATGAGACACAGATGTTCTGACAGCGAAGATGATGCTACTGAAGTGAAGGAGTTGATGACAGAGATGATGAAGCTCATAGGCAGTTTTAACTTGTCGGATTTTGTCTGGTTTTGTAAGAATTTAGACCTACAGGGGTTTAAGAAGAGGGTCAAAGAAGCTCGTGCAAGGTTTGATGCAATAATGGAAAGGGTCATGAAGGCTCGTGAAGAAGAAAGGAGGAAGAAGAGGGACATGAATGATGCAGGAGTCGCAATGAATGACTTTCTTGATATTTTACTTGATATCATGGAAAATGAGAAAGAGGAGATGAGACTGACAAGAGAGAACGTCAAGGGCATCATTTTGGATATTTTTGGAGGGGGAACAGAAACATCTGGTACCGCAGCAATATGGGCAGTAGCGGAGCTAATTAACCACCCAAACATTATGGAGAAAGCGAGACAAGAGATCGATTCTGTAGTGGGAAAGGACAGACTTGTGGAAGAATCAGATATCGCAAACCTTCCTTATCTTCAAGCCATTGTTAAGGAGATACTTAGGCTCCATCCTCCTGGCGCATTAATCGCTAGAGAATCTACAGAAGATTGCACCATTGGAGGTTATCATATTCCTGCAAAGACCCAACTATTTGTTAACCGTTGGGCTATTGGAAGGGACCCAAACTACTGGGAGAACCCACTTCAGTTCTTGCCCGAGAGATTCCTGACAGAAGATGGGAGTCTAAAGAGTCACTTGGATGTAAGGGGCCAACATTTTCATCTGCTGCCATTTGGGAGTGGAAGGAGAATTTGCCCTGGAGTTTCACTAGCACTGCAGGTAATTCAGACAAGCCTGGCTGCTATGATCCAGTGTTTTGAATGGAGAGTTGGTGATGGAGGAAATGGAAATGTTGATATGGAAGAGGGGCCTAACGCAGTCCTTGTACACCCTTTGATTTGTGTCCCAGTGGCTAGGGTCAATCCATTTCCAAAATATACAATGTAA 1551 0.4371 MADVQDHVILFLIWLISFILARALFTKYRTRVRRPPGPLALPIIGHFHLLGSKPYQSLHKLSLRYGPLFQFYFGSIPSVVVSSGEMAKEFLQTHDISFANRPKLSNIDYLFYGSNDIAFASYGPYWKFMKKLSMTKLLGVQTLDKFVPVMREERHLFLQTLLGKAEAGEAVDVKKEIMRLTNNLITKMIMRHRCSDSEDDATEVKELMTEMMKLIGSFNLSDFVWFCKNLDLQGFKKRVKEARARFDAIMERVMKAREEERRKKRDMNDAGVAMNDFLDILLDIMENEKEEMRLTRENVKGIILDIFGGGTETSGTAAIWAVAELINHPNIMEKARQEIDSVVGKDRLVEESDIANLPYLQAIVKEILRLHPPGALIARESTEDCTIGGYHIPAKTQLFVNRWAIGRDPNYWENPLQFLPERFLTEDGSLKSHLDVRGQHFHLLPFGSGRRICPGVSLALQVIQTSLAAMIQCFEWRVGDGGNGNVDMEEGPNAVLVHPLICVPVARVNPFPKYTM* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1556 516 Coils Coil 278 298 - -
Vvi8g1556 516 SUPERFAMILY Cytochrome P450 27 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 Coils Coil 232 270 - -
Vvi8g1556 516 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PANTHER CYTOCHROME P450 98A9 10 493 - -
Vvi8g1556 516 CDD CYP93 66 504 - -
Vvi8g1556 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Vvi8g1556 516 FunFam Cytochrome P450 family protein 26 502 - -
Vvi8g1556 516 Pfam Cytochrome P450 35 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1556 516 Gene3D Cytochrome P450 21 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1556 Vvi-Chr8 21190543 21192196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1556 1 507 Cytochrome P450 AT5G06900 47.554 2.25e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1556 K24188 - vvi:100265763 1014.99