Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1550 ATGGGTGTAATAAAGGCGGCGATTGGTGATGGGGTGTTGACTTTCATGTGGGTGTTCTGCGTTTCGACGGTGGGGATATTCACCTCTCTCATATCGTCGGCCTTGGGGGTTCAGGCGCTGCCGTTGGCTGCGATTTTCATCACCACTGTCCTTATCTTTGTTCTTGTGTTCGTGTTCAGCGCGATAGGGGATGTCTTGGGTGGGGCCAGCTTCAATCCCACTGCAACTGCTGCGCTCTATGCCGCCGGTGTCACACCCGACAGCCTCATCTCCATGGCTTTCCGTTTTCCTGCTCAGGCAGCTGGTGCTGTGGGTGGTGCCCTGGCAATCATGGAGGTGATGCCAACACAGTACAAACACATGCTTGGGGGGCCTTCTTTGAAAGTGGACTTGCATACTGGAGCCATTGCTGAGGGGATTTTGACCTTTACAATTAGCTTTCTCGTGCTTTTGGTTGTCCTCAAAGGTCCAAAGAGTCCAGTATTGAAGACATGGTTGCTTGCCATGGCGACTGTAACTCTGGTCGTCTCAGGCTCTGCTTACACTGGGCCTTCCATGAATCCCGCCAATGCATTTGGATGGGCATATATAAACAATTGGCATAACACATGGGACCAGTTGTACGTTTACTGGATCTGCCCCTTCATAGGGGCAATATTGGCTGCATGGGTCTTCCGATTCCTATTTCCAGCACCAACAAAGCAGAAGAAAGCCTGA 717 0.5146 MGVIKAAIGDGVLTFMWVFCVSTVGIFTSLISSALGVQALPLAAIFITTVLIFVLVFVFSAIGDVLGGASFNPTATAALYAAGVTPDSLISMAFRFPAQAAGAVGGALAIMEVMPTQYKHMLGGPSLKVDLHTGAIAEGILTFTISFLVLLVVLKGPKSPVLKTWLLAMATVTLVVSGSAYTGPSMNPANAFGWAYINNWHNTWDQLYVYWICPFIGAILAAWVFRFLFPAPTKQKKA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1550 238 SUPERFAMILY Aquaporin-like 3 233 IPR023271 -
Vvi8g1550 238 PANTHER AQUAPORIN SIP1-1 1 237 IPR044222 GO:0015250
Vvi8g1550 238 FunFam Aquaporin SIP1-1 1 238 - -
Vvi8g1550 238 Pfam Major intrinsic protein 4 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1550 238 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1550 238 PRINTS Major intrinsic protein family signature 208 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1550 238 PRINTS Major intrinsic protein family signature 168 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1550 238 PRINTS Major intrinsic protein family signature 137 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1550 238 PRINTS Major intrinsic protein family signature 91 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1550 238 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1550 238 Gene3D Glycerol uptake facilitator protein. 2 237 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1550 Vvi-Chr8 21139101 21144589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1550 1 229 Major Intrinsic Protein MIP AT3G04090 59.389 4.24e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1550 K09875 - vvi:100232979 459.529