Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1549 ATGGACAACCCGCAATCCACTCTCCCCCCAGGCTTTCGTTTCCACCCAACAGATGAGGAGCTCATTCTTCACTACCTGAGCAAGAAGGTGACGTCCACGCCCTTCCCAGTTTCCATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTACTGGAAAGCAACCGGAACGGATAAAACCATTGTAGCAGCGTCGAGTATCGGAGGAGGAGGGCATGGGCATATTGGTGTGAAGAAGGCGCTTGTGTTTTACCAGGGAAGACCTCCCAAGGGAATCAAGACTAATTGGATCATGCATGAGTATCGCCTAGCTCAGCCCCCCAACCCCGCCATCAACAAACCCCCCCTCAAGCTCAGAGATGCATCCATGAGGTTGGATAATTGGGTTCTCTGCCGGATCTACAAGAAATCCAATGCGGTTCCTCCGGCAACAGCAGCGGCCATAGACGACGACCGAGAACAAGAAGATTCTTTTATGGAAGAGAGCTTGAAAAGCCACCCTAACCAGAGCACCATCCAGCCGCAGAAACCTTCTTCCTTCTCCAACATACTGGACGCCATGGACTCTTCCACACTCGGTCATCTCTTCTCTGATATCCAATACTCTGATCCCACTGGTTTCGAACCCACCCCACCGGCCAAGTATGGGAGTCTGGGCCAATCCAACGACATCCTCCCAAAGCTTCCTTACTGGAAGTCGGTTCCAAGCATGGAAAACCAGCTGAAGCGCCAACGTTCGAGCATGGATGGGGATGTGCCTTGCCCATCAAAGAAACTTACAAGTTCTTGCACTTTCACCACCAACCCTAATCAGTCAGACCTCCCGCAAAGCTACTTCAATCAATCATTATTCAATCAGGCATTACTTTTGAATCCTTATTTCCCATTTCAAGGATGA 1008 0.501 MDNPQSTLPPGFRFHPTDEELILHYLSKKVTSTPFPVSIIADVDIYKFDPWELPGKAVFGEKEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKTIVAASSIGGGGHGHIGVKKALVFYQGRPPKGIKTNWIMHEYRLAQPPNPAINKPPLKLRDASMRLDNWVLCRIYKKSNAVPPATAAAIDDDREQEDSFMEESLKSHPNQSTIQPQKPSSFSNILDAMDSSTLGHLFSDIQYSDPTGFEPTPPAKYGSLGQSNDILPKLPYWKSVPSMENQLKRQRSSMDGDVPCPSKKLTSSCTFTTNPNQSDLPQSYFNQSLFNQALLLNPYFPFQG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1549 335 Gene3D NAC domain 17 177 IPR036093 GO:0003677|GO:0006355
Vvi8g1549 335 SUPERFAMILY NAC domain 5 173 IPR036093 GO:0003677|GO:0006355
Vvi8g1549 335 MobiDBLite consensus disorder prediction 200 215 - -
Vvi8g1549 335 FunFam NAC transcription factor 56 17 178 - -
Vvi8g1549 335 ProSiteProfiles NAC domain profile. 8 173 IPR003441 GO:0003677|GO:0006355
Vvi8g1549 335 MobiDBLite consensus disorder prediction 188 215 - -
Vvi8g1549 335 Pfam No apical meristem (NAM) protein 9 140 IPR003441 GO:0003677|GO:0006355
Vvi8g1549 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1549 Vvi-Chr8 21134952 21136464 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1549 3 335 NAC Transcription Factor Family AT3G04070 49.148 1.84e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi8g1549 NAM 4.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1549 - - vvi:100250331 684.871