Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1546 ATGAATAGTAGCTTCAGTGCAAGAGCTATTGGAGAAGTTGACCTTAACAAGTGTGAACCCTGGGATTTACCTAAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATACTGGAAGGCCACTGGAAAGGATAAAGAGATTTACAAGGGGAAGGGTTGTCTTGTTGGGATGAAGAAGACCCTTGTTTTCTACCGAGGGAGAGCCCCCAAAGGAGAGAAAAGCAATTGGGTCATGCACGAATACAGACTGGAAGGCAAATTCTCATATTACAACCTCCCCAAAGCCGCAAAGGATGAATGGGTCGTCTGTAGGGTATTCCACAAGAGCGCGGGGATCAAACGAAGTCTTATTCCTGCGCCGATAAGGATGAACTCTTTTGGGGATGATCTCTTGGACTGTTCTTCTCTACCACCTCTTATTGACCCTCCTTATTCCAACCCCAACAAAAATGATTCCTGCTTTACAAATGGTGAAGATGAATTCAAGGGATCATCAACCAGATTTTCAGATGGAAACCACCACTACCCTTACTTCTCCCCCACCATAAACGGTCATCAACTGCAAAAGCAACAAGATCAGAAGAGCTTTCTTCTATCCCCCAATAACGTGCACACCACCTCCAACTACCAAGCCACCCTAAGCAACCCTACACCAAACTCCATTTTCTACCCCCAAGTTTCTCCCTCGAATCCTCTTTTCCCCTTCCAAGCATCCCCAACTCCTAGTTATTCACACTGGCAGATGGGTAGTTCATTTCCAAGCTTTCCGGGCTCTGGCTTCAAAGGTAGTGATCCGACCAGTACCGTAAGAGCCCAGACATCTGGCGTACAGAGGCAATGCAAGGTGGAGCAGTTCTCATCCAACCAGTCTATGGTCAGCCTCTCGCAGGACACCGGACTCAGCACTGACATGAACACGGAGATATCCTCTGTGCTTTCAAAGCATCAAGACACAGGAAACAACAGGTCTTACGAAGATCTTCAAGGTCCATCGGTCGGCCAAATCGGAGATTTGGATTATTTACTCGACTACTGA 1098 0.4681 MNSSFSARAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKSAGIKRSLIPAPIRMNSFGDDLLDCSSLPPLIDPPYSNPNKNDSCFTNGEDEFKGSSTRFSDGNHHYPYFSPTINGHQLQKQQDQKSFLLSPNNVHTTSNYQATLSNPTPNSIFYPQVSPSNPLFPFQASPTPSYSHWQMGSSFPSFPGSGFKGSDPTSTVRAQTSGVQRQCKVEQFSSNQSMVSLSQDTGLSTDMNTEISSVLSKHQDTGNNRSYEDLQGPSVGQIGDLDYLLDY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1546 365 ProSiteProfiles NAC domain profile. 1 129 IPR003441 GO:0003677|GO:0006355
Vvi8g1546 365 FunFam NAC domain-containing protein 100-like 1 133 - -
Vvi8g1546 365 Pfam No apical meristem (NAM) protein 4 104 IPR003441 GO:0003677|GO:0006355
Vvi8g1546 365 Gene3D NAC domain 1 133 IPR036093 GO:0003677|GO:0006355
Vvi8g1546 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 269 - -
Vvi8g1546 365 SUPERFAMILY NAC domain 3 129 IPR036093 GO:0003677|GO:0006355
Vvi8g1546 365 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1546 Vvi-Chr8 21123477 21124875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1546 1 165 NAC Transcription Factor Family AT5G18270 76.879 9.33e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi8g1546 NAM 2.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1546 - - vvi:100263995 746.117