Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1540 ATGTATCATCATCACCATCATCAAGGAAAGAACATCCATCCTTCTTCAAGAACGCCCATCACTCCTGAAAGGAATTTGTTCCTGCAAGGTGGGAATGGCCCTGGTGATTCAGGACTTGTCCTCTCAACCGATGCTAAGCCTAGACTTAAATGGACGCCAGACCTTCATGAGCGGTTCATAGAAGCAGTTAATCAGCTTGGAGGGGCAGACAAGGCTACTCCAAAAACTGTTATGAAACTTATGGGAATTCCTGGACTTACCTTATACCATCTGAAGAGTCATCTACAGAAATACAGGCTCAGTAAGAATCTTCATGGACAAGCTAACAGTGCGACCAGCAAAACTGTGGTGGGAGAGAGGATGCCTGAAGCAAATGGAGCCCTAATGAGCAGCCCCAACATTGGGAACCAAACAAACAAGAGCTTACATTTAAGTGAAACACTACAGATGATTGAAGCACAGAGAAGGTTACATGAGCAGCTTGAGGTGCAGCGACACCTACAGCTCCGGATCGAAGCACAAGGAAAATACCTACAGGCAGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAGAACTTGGGAGCAGTGGGACTTGAAGCAGCCAAAGTTCAGCTGTCTGAGTTGGTATCTAAAGTATCAACCCAATGCCTCCATTCTGCATTTTCAGAGCTCAAAGAACTGCAGAGTTTGTGCCCTCAGCAAACCCAAACCCAGCCCACAGACTGTTCCATGGACAGCTGTTTGACCTCATGTGAAGGATCTCAAAGAGAGCAGGAGATACACAACTGTGGGATGGGGTTGAGACCATATACTAATGGTAGTACACCTCTAGAGGCAAAAGATACCGCAGAGCCTCCTGGGCTGCAACATACAGTGCTGAAGTGGTGCGAAGACACAAAGGAGAATAGACAGTTTATATCCTCAATGCAAAGGGATGCTGAGAGGAGAACAATGACTGCCGAGAGAAGCAACAGTGATTTATCCATGCGCATTGGACTTCAAGGAGAAAAAGGGAATGGCAGCAACAGCTATTCTGAGGGCAGATTTAAAGGGAGAGCTGAGGCAGACAATTTTGTAGATCGAACCAACCATGGAGCAGATTCAGGTAATTCGGTTAAACAAGAGAATGAGAAGATGTCGCATGGATACAGGCTCCCTTGTTTTGGGGCAAAATTGGACCTAAATGCCCATGACGAAAATGATGTCACTTTGAGTTGCAAACAATTTGATTTGAATGGTTTCAGCTGGAACTGA 1257 0.4606 MYHHHHHQGKNIHPSSRTPITPERNLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSATSKTVVGERMPEANGALMSSPNIGNQTNKSLHLSETLQMIEAQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEAAKVQLSELVSKVSTQCLHSAFSELKELQSLCPQQTQTQPTDCSMDSCLTSCEGSQREQEIHNCGMGLRPYTNGSTPLEAKDTAEPPGLQHTVLKWCEDTKENRQFISSMQRDAERRTMTAERSNSDLSMRIGLQGEKGNGSNSYSEGRFKGRAEADNFVDRTNHGADSGNSVKQENEKMSHGYRLPCFGAKLDLNAHDENDVTLSCKQFDLNGFSWN* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1540 418 FunFam Myb family transcription factor 45 103 - -
Vvi8g1540 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 308 IPR044848 GO:0003700
Vvi8g1540 418 MobiDBLite consensus disorder prediction 1 38 - -
Vvi8g1540 418 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Vvi8g1540 418 Gene3D - 45 104 - -
Vvi8g1540 418 Coils Coil 144 164 - -
Vvi8g1540 418 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Vvi8g1540 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vvi8g1540 418 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Vvi8g1540 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1540 Vvi-Chr8 21070656 21073319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1540 78 418 G2-like Transcription Factor Family AT3G04030 52.874 1.70e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi8g1540 Myb_DNA-binding 7.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1540 - - vvi:100248614 837.795