Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1537 ATGGATTTCTACCGGGAAGTATCAGTTTCCGGTGAATACCCTCAGGAGCAGGTCCCTTCCACAGTCTGCTCCAAGCTTGGGGGCTTATCAGCTGGTTCTCTTGATGATCTTTTCTCCACCCAGAATACGGAAGTGGATGTTAGCTTAGAGTGGCTGTCAATTTTCGTAGAGGACTGCTTATCCAGCACCGGAAACTGCCTCCCGGCGCCCAAAAATGTTGCAAGTGATAGTGCAACCCCGAAACCCTCAAAACCCTTGCAGTCAATGCAGAAACCCCAACAAAAACCTTCGTCCCCACTGCAAAATTTGGTAATCCCAGGCAAGGCCAGAAGCAAAAGAAAAAGGGCCACAACCATAACCACCTCGTTCAGCAACTGGGTTCACCATCTAAACCCGGAAAACCAAAACCTCCATATTACCAGCTCTGACCCTCCTTTGCTTCAACAAGCTTATTGGTTGGCTGACAGTGAGCTCATTGTGCCCAAAAAGGAGGAGAGCAGCAGCAATAACAACAACAATAACAACAGCATGGTGAAAGAAGAAGAGGAAGTAGAAGAAGAAGAGGAGGAGGAAGAAGAAGAGGAAGAAACAAGGGAGGAGGTGGAGGTGGAGGTGGAGAAGGGGAACAAGGAGAGGTGGGGCAATTTGGAGGGGAGTAATGGGCAGCCAAGGAGGTGCACCCATTGTCTAGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGCCCTAAAACACTCTGCAATGCATGTGGTGTGAGGTACAAGTCGGGCAGGTTGCTGCCCGAATACAGGCCGGCCAAAAGCCCTACTTTTGTGAGCTATAAGCACTCCAATTCTCATAAGAAAGTCATGGAGATGAGAATGGCTGTTCTCTCTTCCATTCCCAGTGACCAGTGA 900 0.4978 MDFYREVSVSGEYPQEQVPSTVCSKLGGLSAGSLDDLFSTQNTEVDVSLEWLSIFVEDCLSSTGNCLPAPKNVASDSATPKPSKPLQSMQKPQQKPSSPLQNLVIPGKARSKRKRATTITTSFSNWVHHLNPENQNLHITSSDPPLLQQAYWLADSELIVPKKEESSSNNNNNNNSMVKEEEEVEEEEEEEEEEEETREEVEVEVEKGNKERWGNLEGSNGQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYKHSNSHKKVMEMRMAVLSSIPSDQ* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1537 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
Vvi8g1537 299 PANTHER GATA TRANSCRIPTION FACTOR 30 292 - -
Vvi8g1537 299 FunFam GATA transcription factor 217 296 - -
Vvi8g1537 299 MobiDBLite consensus disorder prediction 71 101 - -
Vvi8g1537 299 CDD ZnF_GATA 225 272 IPR000679 GO:0006355|GO:0043565
Vvi8g1537 299 MobiDBLite consensus disorder prediction 71 115 - -
Vvi8g1537 299 Gene3D - 217 287 IPR013088 GO:0006355|GO:0008270
Vvi8g1537 299 MobiDBLite consensus disorder prediction 163 223 - -
Vvi8g1537 299 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
Vvi8g1537 299 SMART GATA_3 220 274 IPR000679 GO:0006355|GO:0043565
Vvi8g1537 299 Coils Coil 170 211 - -
Vvi8g1537 299 MobiDBLite consensus disorder prediction 180 201 - -
Vvi8g1537 299 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355|GO:0043565
Vvi8g1537 299 MobiDBLite consensus disorder prediction 163 177 - -
Vvi8g1537 299 Pfam GATA zinc finger 226 260 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1537 Vvi-Chr8 21037563 21038889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1537 49 288 C2C2-Gata Transcription Factor Family AT4G32890 35.743 3.40e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi8g1537 GATA 1.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1537 - - vvi:100258862 488.419