Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1526 ATGGAAGAAGGAAAGGCTGAACAAGAAGTCGATGAGCTCGAGATCCTATTAAACTTGATACCAAATGCCACTTCTGGAAGTTGGCATCCTCAGAATTCTATACAGAAATATTCCTCAACTGATTTTGAACGGAATCATTTGCATGAAAAGACTAGAGAGTCCTTTCCTCCTCCTCCTGCTTTGTCCTTCGGCAAACAAGGCAATTCATTTGAAGGAACTTGTGATGGGAAAATTGAAACCTACGGAAGGTTAGATGGTGACAGATTAGGCCTAGAAGGCGATCACCAGACACCCATCAAGATTATGGACCAGGAGGAGTCTAACCTGCCCAGTGAGCAATCCCTTTCATCTTCATTAGCAGAATTGAGCTTCAAAGGGGAAGAGGCAATTAAAGCTGCCAATTCTCAGAGGCTCGATCACACCTTTTTACTGGATGATCAATTTGCAAACTTGCTAAAAGACTCTCTCCCCCTTTCTCCACAATCACATAGTATACTTACTAGAACAAATACTGAGGACATCCCACCAAACCGCTTTGATCAATTCAATGTGGAAATGAATGGGAAACACAATGTGGACTTTCTGAAGCTTGATGATCAAGTGCAGGGGGAGAAAGCTGTTTCTTGCCAGCTGTTAGCTTATCAAACAAATCCTTCTCAGGTTCTTTTGACCGTTTCTTCTCCTGGAACCAAGGTTCCAGATGTGCCCTGTTCGCAAAGTTACTTCTCAAGTCTGCAGTCTCCTGTTCTTGGAATGCAATCACAAGAATTTACAGAGTCTCACATTCCATGGCTGCATGCAGAGGAGGAGCGGTATTCCATAATGCATAAGAAATATCTGCACTGGCATGATCTCCAAAATCAGCGATCAGAAGCCCGAAATCTGATTCAGGCCAGTGAGAATGCAGCAAATGTGATTAGAACTTGGAACATTGAAAAATCATATGTCAACAATCCCATTTCCTATCAATATGAAAATTTTAGTGAAGAATCCTTTCAGAGCGATGGTGCAATTCCCAGGAGATTTGGTTGTTCAGGCTCCAATTTAATCAGCAGCATTCTTTGTCGCTACTATGCTCAGGGTTTCTGTGGAAGGGGTGAGAATTGTCCATTCACGCATGGCCAGAGGAAGAAATGTCCAATCAGTTTTGCTAATCCGCAACCTGCCCTTTCCCCAAAAGATTTTAACGTTGTCCAAGGTTTTGGGAAAATGGGGGAACAATCTTATCCTGAAAAGATATTAATGAGGAAGAATGGTCTAAATTCAGTTAAAGAAATCAACTTTATCAGAGAAAGTGAATTGTTTACAAATTCGAGCTCTAATGGAAGGATGATTTCAAATGGCCATTTCTACCACAATGCTCATATCGTTGGCACTAGATCATCCCCAGTGGATGGTAGGAAATACTGGCCCCAGCCCCTTGATACTAAAGACAGCAGGCATGATAATCTGAGGTTGCAAACTCGGAAGTATAATTCAGTAGATGAAGTTACTGGTAGAATTTATTTAATGGCTAAGGATCAAAGTGGTTGCCGTTTCTTGCAAAGGAAAATGACAGAGGGCAATGCTGAAGATATTGAGAAGATCTTCCTTGAGATTGTTGGACATGTTGTTGAGCTTATGACACATCCTTTTGGCAATTATCTTGTTCAAAAGCTCCTTGAAGTGTGTAGCGAGGATCAGAGGACACAAATAGTCTTTGCGATCACTGCAAAAGCCGGAGATCTTCTTACAGTTTCAATTAACATGCATGGGACTAGGTCTGTTCAAAAGGTGATTGAAACCATTAAAAGCCCAGAGCAATTTTTGATGGTTGTTGCATCACTGAAGCCTGGTATCGTGAATTTGATTAAAGATTTGAATGGTTATCATGTTGCAGAATGCTGCTTGCAGCACTTGATGCCTGGATATATTGAGTTCCTTTTTGAAGCTGTGAGTGCTCACTGTGTTGAGCTTGCAACGGATTGTCATGGCTGCCGTGTACTTCAAAAATGCCTTGGCCATTCTGATGGGGAACATAGACTCCGTTTGCTATCTGCAATCATTGCCAATGCTCTTATCCTGTCCCAAGATCCATTTGGGAATTATGTTGTGCAATATGTATTTGAACTTGAGGGTTCATGGGCAAGAACAGAAGTGCTCAACCAATTGGAGGGTTACTATAGGTACCTCTCCATGCAGAAGTACAGCAGCAATGTTGTTGAGAAGTGCCTGAAATATGCTGGGGAAGAGCGGTTTGCTCGTATCATTCAAGAATTCATGGATCATCCCCAATTAGATCAGATGATGCTGGACCCATATGCCAATTATGTCATTCAAACCGCATTAAACCACTCCAAGGGGGCACTTCATGCTGCATTATTGGAGGCAATAAGGCCCCATATTCCAGCACTCAGGACAAACCCATATGGGAAAAAGGTCTTATCCAGCTGCGGGTTGAAGAAATAA 2448 0.4216 MEEGKAEQEVDELEILLNLIPNATSGSWHPQNSIQKYSSTDFERNHLHEKTRESFPPPPALSFGKQGNSFEGTCDGKIETYGRLDGDRLGLEGDHQTPIKIMDQEESNLPSEQSLSSSLAELSFKGEEAIKAANSQRLDHTFLLDDQFANLLKDSLPLSPQSHSILTRTNTEDIPPNRFDQFNVEMNGKHNVDFLKLDDQVQGEKAVSCQLLAYQTNPSQVLLTVSSPGTKVPDVPCSQSYFSSLQSPVLGMQSQEFTESHIPWLHAEEERYSIMHKKYLHWHDLQNQRSEARNLIQASENAANVIRTWNIEKSYVNNPISYQYENFSEESFQSDGAIPRRFGCSGSNLISSILCRYYAQGFCGRGENCPFTHGQRKKCPISFANPQPALSPKDFNVVQGFGKMGEQSYPEKILMRKNGLNSVKEINFIRESELFTNSSSNGRMISNGHFYHNAHIVGTRSSPVDGRKYWPQPLDTKDSRHDNLRLQTRKYNSVDEVTGRIYLMAKDQSGCRFLQRKMTEGNAEDIEKIFLEIVGHVVELMTHPFGNYLVQKLLEVCSEDQRTQIVFAITAKAGDLLTVSINMHGTRSVQKVIETIKSPEQFLMVVASLKPGIVNLIKDLNGYHVAECCLQHLMPGYIEFLFEAVSAHCVELATDCHGCRVLQKCLGHSDGEHRLRLLSAIIANALILSQDPFGNYVVQYVFELEGSWARTEVLNQLEGYYRYLSMQKYSSNVVEKCLKYAGEERFARIIQEFMDHPQLDQMMLDPYANYVIQTALNHSKGALHAALLEAIRPHIPALRTNPYGKKVLSSCGLKK* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1526 815 ProSiteProfiles Pumilio RNA-binding repeat profile. 532 567 IPR001313 GO:0003723
Vvi8g1526 815 ProSiteProfiles Pumilio RNA-binding repeat profile. 680 715 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 644 679 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 680 715 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 754 789 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 571 606 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 532 567 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 496 531 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 608 643 IPR001313 GO:0003723
Vvi8g1526 815 SMART pum_5 716 751 IPR001313 GO:0003723
Vvi8g1526 815 CDD Pumilio 499 811 IPR033712 GO:0003723
Vvi8g1526 815 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 288 809 - -
Vvi8g1526 815 SUPERFAMILY CCCH zinc finger 352 374 IPR036855 GO:0046872
Vvi8g1526 815 ProSiteProfiles Zinc finger C3H1-type profile. 349 376 IPR000571 GO:0046872
Vvi8g1526 815 ProSiteProfiles Pumilio RNA-binding repeat profile. 716 751 IPR001313 GO:0003723
Vvi8g1526 815 ProSiteProfiles Pumilio RNA-binding repeat profile. 644 679 IPR001313 GO:0003723
Vvi8g1526 815 ProSiteProfiles Pumilio RNA-binding repeat profile. 568 607 IPR001313 GO:0003723
Vvi8g1526 815 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 475 815 IPR033133 GO:0003723
Vvi8g1526 815 Gene3D - 476 814 IPR011989 -
Vvi8g1526 815 FunFam Pumilio homolog 9 483 815 - -
Vvi8g1526 815 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 375 IPR000571 GO:0046872
Vvi8g1526 815 Pfam Pumilio-family RNA binding repeat 536 569 IPR001313 GO:0003723
Vvi8g1526 815 Pfam Pumilio-family RNA binding repeat 686 703 IPR001313 GO:0003723
Vvi8g1526 815 Pfam Pumilio-family RNA binding repeat 761 791 IPR001313 GO:0003723
Vvi8g1526 815 Pfam Pumilio-family RNA binding repeat 648 682 IPR001313 GO:0003723
Vvi8g1526 815 Pfam Pumilio-family RNA binding repeat 577 607 IPR001313 GO:0003723
Vvi8g1526 815 Pfam Pumilio-family RNA binding repeat 724 752 IPR001313 GO:0003723
Vvi8g1526 815 Pfam Pumilio-family RNA binding repeat 500 533 IPR001313 GO:0003723
Vvi8g1526 815 SMART c3hfinal6 351 375 IPR000571 GO:0046872
Vvi8g1526 815 ProSiteProfiles Pumilio RNA-binding repeat profile. 496 531 IPR001313 GO:0003723
Vvi8g1526 815 Gene3D - 347 427 - -
Vvi8g1526 815 ProSiteProfiles Pumilio RNA-binding repeat profile. 752 789 IPR001313 GO:0003723
Vvi8g1526 815 SUPERFAMILY ARM repeat 481 811 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1526 Vvi-Chr8 20969307 20973768 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi8g1526 PUF 8.8e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1526 - - vvi:100250413 1613.97