Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1524 ATGCCAGAGTTGCGAAGTGGACCGCGGAGATCAAAGCGGCTTGATGATCTTCAACCTTCGCCACAACCAGGGGATCAAGCAGAAAATTGGCTTCTGCCTGCTCAAAACAGACCCAGGAGGAGAGTTGGTGGTGGAAGAGGAAGGGGCTGTAATGCTACGCCTCTAGCAAAAGGGCCTTCAGCAGCGATAGCCACAAGGCCAGCGGCTGCCGGTAGAGGCAGGGGCATTAGATTGATAGACTTAGATCCAGAGCCTCCTTGTGAGGTTCATCCAGAAGCTGGTGCTTTAGGTGTTGCAGAGCCTGCTTTTAATCGAGTAGACGCCGTGGCAGATAAAGAAATTGCAATGGAAGGTGGAAGTGCAGAGAAAATTATTGGAGCCGAGGAAGAAGCAAGCACCACTCCTGTCCCAGAGAGGGTACAAGTGGGTAATTCTCCTATATACAAGATAGAAAGGAAGTTAGGTAAGGGTGGTTTTGGTCAAGTGTATGTTGGCAGAAGGGTAAGTGGTGGCACTGAAAGAACGGGACCTGATGCGCTTGAGGTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAACACTCTAAATGGTTGTTATGGGATTCCCTGGGTTCACTACAAGGGTCGCCAAGGAGATTACTACATTCTGGTCATGGACATGTTGGGGCCAAGTCTTTGGGATCTTTGGAATTCTGTAGGCCAGACGATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGGTTTGTGCATGGAGATGTGAAGCCAGAGAACTTTTTACTTGGTCAACCTGGAACTGCTGATGAGAAGAAGCTATTTCTTATTGATCTTGGTTTGGCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAGGGGAACAATACGGTATGCAAGTGTGCATGCACATTTAGGACGGACAGGAAGTAGAAGGGATGATCTCGAGTCACTAGCTTACACATTAATATTTCTCATTAAAGGAAGATTACCATGGCAGGGCTATCAGGGAGACAACAAGAGTTTCCTTGTTTGTAAGAAAAAGATGGCTACTTCACCAGAGTTGATGTGTTGCTTTTGTCCTGCTCCATTCAAACAGTTCCTTGAAGCTGTTACTAATATGAAATTTGACGAGGAGCCAAATTATCCCAAGCTGATATCTCTTTTTGAGAACCTAATTGAACCTGTACAAACGAGACCAATTAGAATTGATGGAGCTCTTAAGGTTGGGCAAAAGCGGGGAAGATTGCTCATAAATTTGGAAGAAGATGAGCAGCCAAAGAAGAAAGTACGATTAGGTAGCCCTGCGACCCAGTGGATATCAGTTTACAATGCACGTCGTCCCATGAAGCAGAGATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGGTAATGAAGATGGGTTACATATAAGCTGTGTGGCCTCTTCATCAAATCTTTGGGCCCTTATTATGGATGCGGGAACAGGTTATAGTTCCCAGGTCTATGAACTATCAGCTGTCTTCCTGCATAAGGATTGGATTATGGAACAGTGGGAAAAGAATTACTACATCAGCTCAATAGCAGGGGCTGCTAATGGGAGTTCTTTGGTTGTCATGTCTAAAGGAACTCCTTATACCCAGCAGTCATACAAAGTGAGTGAATCCTTTCCCTTTAAATGGATTAATAAGAAGTGGAAAGAAGGTTTCCATGTCACATCTATGACTACTGCTGGAAGTCGCTGGGGGGTGGTAATGTCCAGGAACTCTGGATATACTGATCAGGTTGTGGAGCTTGATTTTCTGTATCCAAGTGAAGGAATACACCGGAGATGGGAGTGTGGTTACCGGATTACATCTATGGCTGCAACTAATGACCAGGCAGCTTTCATACTGAGCATACCAAAACGTAAAATGATGGACGAAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGGAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACTGTTTGTTAA 2127 0.4513 MPELRSGPRRSKRLDDLQPSPQPGDQAENWLLPAQNRPRRRVGGGRGRGCNATPLAKGPSAAIATRPAAAGRGRGIRLIDLDPEPPCEVHPEAGALGVAEPAFNRVDAVADKEIAMEGGSAEKIIGAEEEASTTPVPERVQVGNSPIYKIERKLGKGGFGQVYVGRRVSGGTERTGPDALEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDYYILVMDMLGPSLWDLWNSVGQTMSPNMVACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADEKKLFLIDLGLASKWKDTTSGQHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFCPAPFKQFLEAVTNMKFDEEPNYPKLISLFENLIEPVQTRPIRIDGALKVGQKRGRLLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADSRLPQHVEKGNEDGLHISCVASSSNLWALIMDAGTGYSSQVYELSAVFLHKDWIMEQWEKNYYISSIAGAANGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNSGYTDQVVELDFLYPSEGIHRRWECGYRITSMAATNDQAAFILSIPKRKMMDETQETLRTSAFPSTHVKEKWSKNLYIAAICYGRTVC* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1524 708 CDD STKc_CK1 148 422 - -
Vvi8g1524 708 ProSitePatterns Protein kinases ATP-binding region signature. 154 185 IPR017441 GO:0005524
Vvi8g1524 708 SMART serkin_6 148 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1524 708 Gene3D Transferase(Phosphotransferase) domain 1 117 467 - -
Vvi8g1524 708 SUPERFAMILY Protein kinase-like (PK-like) 148 430 IPR011009 -
Vvi8g1524 708 FunFam Casein kinase 1-like protein 120 467 - -
Vvi8g1524 708 Pfam Protein kinase domain 148 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1524 708 ProSiteProfiles Protein kinase domain profile. 148 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1524 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Vvi8g1524 708 MobiDBLite consensus disorder prediction 1 58 - -
Vvi8g1524 708 MobiDBLite consensus disorder prediction 1 16 - -
Vvi8g1524 708 PANTHER CASEIN KINASE-RELATED 148 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1524 Vvi-Chr8 20954329 20960803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1524 148 402 AGC Kinase Gene Family AT3G08730 23.346 2.04e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vvi8g1524 Pkinase 2.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1524 - - vvi:100267624 1424.84