Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1507 ATGGAAATTCAATTCCAGCAGCCAAAGGGAGCCATTCCGGCCACCAAGGTGAGAAAATTCAAGGGAAGAAACAGAAGCAATAGCAATAACAAGTTTGTAGGGGTGAGACAAAGGCCATCTGGGAGATGGGTTGCTGAGATCAAAGACACTACACAGAAGATAAGGATGTGGCTTGGAACTTTTGAGACTGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCTGCTTGCCTTCTTCGTGGATCCAACACTCGCACAAATTTCATTCCCAACGTCTCCTCCAATTCTCCTCTGGCTTCCAGGATCCGGACCCTCCTTGATAACAAAAAGGGAGCAAAGCAACCAAAACAAACCAGTGTTGATAGCAGTAACATTTCCACTACAATAGTCACTCCTTGTGCCAGTAGTTGCACCAGCAGTGGCAGTAATTCTCTTTCTAGTGAAAAAATTCAGGAGACCCAGTTGTTTGATGATGCATATAAGCCAGATTTGAGCAACTGCAGTGAGGAAGTGGAGTTGGGTTCTTCTGAATCCGGCCTGTCATGGGGTTTTGCAGCCGGGTTTGACCGGTTTTCATTTGCTCAACAAGTGTTGGACTTGCCAAAGAATGGTGGGTTGCAGGAGGCAGCTGAGGGGGAGTTTTCGGAATTCGAACGGATGAAAGTTGAGAGGCAAATATCTGCATCGCTCTATGCCATGAATGGGGTTCAAGAGTATATGGATACTGTCCATGATCCTTCTGATGCTCTGTGGGATCTTCCTCCTCTATGTTCTTTGTTCTGCTAA 783 0.4636 MEIQFQQPKGAIPATKVRKFKGRNRSNSNNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPNVSSNSPLASRIRTLLDNKKGAKQPKQTSVDSSNISTTIVTPCASSCTSSGSNSLSSEKIQETQLFDDAYKPDLSNCSEEVELGSSESGLSWGFAAGFDRFSFAQQVLDLPKNGGLQEAAEGEFSEFERMKVERQISASLYAMNGVQEYMDTVHDPSDALWDLPPLCSLFC* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1507 260 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Vvi8g1507 260 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Vvi8g1507 260 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Vvi8g1507 260 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Vvi8g1507 260 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Vvi8g1507 260 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Vvi8g1507 260 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Vvi8g1507 260 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Vvi8g1507 260 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 226 - -
Vvi8g1507 260 FunFam ethylene-responsive transcription factor RAP2-11 30 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1507 Vvi-Chr8 20880222 20881004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1507 15 260 AP2-EREBP Transcription Factor Family AT5G19790 43.191 6.96e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi8g1507 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1507 K09286 - vvi:100265914 479.944