Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1505 ATGAGAAATCCGGCATCTGCGTCTACGAGTAAGACTCCGTGCTGTACCAAGGTTGGGTTGAAAAGAGGACCATGGACGCCTGAGGAAGATGAGCTTCTAGCTAATTATGTGAAGAGAGAAGGTGAAGGGAGGTGGAGGACGCTGCCGAAGCGAGCTGGGTTGCTGCGGTGCGGCAAGAGCTGTCGCCTCCGGTGGATGAATTATCTTCGGCCGTCAGTGAAGCGCGGCCAGATAGCTCCCGATGAGGAAGATCTCATTCTTCGCCTCCATCGCCTGCTCGGTAACAGGTGGTCTCTGATTGCCGGAAGGATCCCGGGGCGTACAGACAATGAGATCAAGAACTACTGGAACACCCATCTCAGCAAGAAACTCATCAGCCAAGGAATAGATCCCAGAACCCACAAGCCACTAAACCCTAAACCTAATCCATCACCAGATGTTAATGCTCCTGTCTCAAAATCAATTCCAAATGCAAACCCTAACCCTAGTTCTTCCCGGGTGGGAGAAATTGGAAGCAACCATGAGGTCAAGGAGATTGAAAGTAATGAAAATCACAAGGAGCCGCCTAACCTGGATCAGTATCACAGTCCACTTGCGGCCGATAGCAATGAGAATTGGCAAAGCGCAGATGGGTTGGTAACGGGACTACAAAGCACCCATGGTACCAGCAACGATGACGAAGACGATATCGGGTTCTGCAACGACGATACATTCTCTTCATTTTTGAATTCTTTGATTAACGAGGATGTGTTTGGAAATCATAATCATCATCATCAGCAGCAGCAGCAACAGCAGCTGCAGCAGCTGCAGCAGCCATCTAATGTGATTGCACCATTGCCCCACCCAGCAATTTCTGTGCAGGCCACCTTCAGTAGTAGCCCTAGAACTGTCTGGGAACCTGCTGCACTAACATCTACATCGGCTCCTTTAGTCCACGATCAAAAAGACTCCATGTCTCCCTGA 963 0.4995 MRNPASASTSKTPCCTKVGLKRGPWTPEEDELLANYVKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPKPNPSPDVNAPVSKSIPNANPNPSSSRVGEIGSNHEVKEIESNENHKEPPNLDQYHSPLAADSNENWQSADGLVTGLQSTHGTSNDDEDDIGFCNDDTFSSFLNSLINEDVFGNHNHHHQQQQQQQLQQLQQPSNVIAPLPHPAISVQATFSSSPRTVWEPAALTSTSAPLVHDQKDSMSP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1505 320 CDD SANT 80 120 IPR001005 -
Vvi8g1505 320 FunFam transcription repressor MYB5-like 79 146 - -
Vvi8g1505 320 MobiDBLite consensus disorder prediction 128 202 - -
Vvi8g1505 320 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vvi8g1505 320 CDD SANT 24 69 IPR001005 -
Vvi8g1505 320 Gene3D - 19 75 - -
Vvi8g1505 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 253 - -
Vvi8g1505 320 Gene3D - 79 143 - -
Vvi8g1505 320 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vvi8g1505 320 FunFam Myb transcription factor 19 75 - -
Vvi8g1505 320 Pfam Myb-like DNA-binding domain 79 120 IPR001005 -
Vvi8g1505 320 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vvi8g1505 320 MobiDBLite consensus disorder prediction 147 170 - -
Vvi8g1505 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Vvi8g1505 320 SMART sant 21 71 IPR001005 -
Vvi8g1505 320 SMART sant 74 122 IPR001005 -
Vvi8g1505 320 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vvi8g1505 320 MobiDBLite consensus disorder prediction 171 190 - -
Vvi8g1505 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1505 Vvi-Chr8 20865562 20866630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1505 2 253 MYB Transcription Factor Family AT3G13540 56.250 8.68e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g1505 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1505 K09422 - vvi:100233122 624.009