Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1504 ATGGCAGTTGAGGTCGCTGATGCTGCTGGTGGAATTACCAATCTTCAGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCATGCCACCTATGTCCCTCACACAGCTGGGAGGTATTCTGTCAAGCGGTTCCGGAAAGCTCAATGTCCAATAGTGGAGAGGCTTACTAACTCTCTGATGATGCATGGTCGCAACAACGGGAAGAAGCTGATGGCAGTTCGAATCATTAAGCATGCCATGGAAATTATCCACTTGTTGACTGAGCAGAATCCCATCCAAGTGATTGTTGATGCTGTGATCAACAGTGGGCCAAGAGAAGATGCAACTCGAATTGGCTCAGCTGGTGTTGTGAGGCGTCAAGCTGTTGATATCTCCCCTTTGAGACGCATCAATCAAGCTATCTATCTCCTCACTACCGGAGCCCGAGAATCTGCTTTCAGGAACATAAAGACAATAGCTGAATGTTTGGCTGATGAACTCATCAATGCTGCAAAAGGTTCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATCGAGAGAGTTGCAAAGGCCAACCGTTGA 627 0.4689 MAVEVADAAGGITNLQETTVKLFNRWSFDEVQISDISLEDYIAVNPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTEQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRINQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1504 208 NCBIfam 30S ribosomal protein S7 20 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vvi8g1504 208 SUPERFAMILY Ribosomal protein S7 21 208 IPR036823 -
Vvi8g1504 208 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 208 IPR000235 GO:0006412
Vvi8g1504 208 ProSitePatterns Ribosomal protein S7 signature. 74 100 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vvi8g1504 208 FunFam 40S ribosomal protein S5 5 208 - -
Vvi8g1504 208 Gene3D Ribosomal protein S7 domain 3 208 IPR036823 -
Vvi8g1504 208 CDD uS7_Eukaryote 21 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vvi8g1504 208 Coils Coil 193 208 - -
Vvi8g1504 208 Pfam Ribosomal protein S7p/S5e 62 208 IPR023798 -
Vvi8g1504 208 PANTHER RIBOSOMAL PROTEIN S7 14 208 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1504 Vvi-Chr8 20857960 20860887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1504 20 208 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 89.947 2.94e-131 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1504 K02989 - vvi:100243591 405.216