Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1503 ATGACTGAGGTACCCCGCATGTTCCATTTGTCCAGGGTGGCTAAAGGAGTAATTTCATTCACCTCTTCAGCCTATATAAGCAAAATTTTGGGGGTTTCTCCTTCAGAAGCCGCCGTCGATCTTCTAAACCCTCACGTCGTCGTCTCCTTAACAGGTCTGTTTCTTCTTCTATTCTCCTCGATTCTCCGTCAGTGCGAAATGGATGCCGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGATCAAGGGGTCAGGTGACACAGGTGAGAGTGAAGTTTTTGGATGATCAGAATAGGTTTATTATGAGGAATGTGAAGGGACCAGTCAGAGAAGGAGACATCCTCACCCTGCTCGAGTCTGAGAGGGAGGCCAGAAGGTTGCGGGTTCCTCTCCTCCGAAGCCGCCGTAAGTGCTCCAAGCCTCTCTTCTTCTCGTCGTCTTCTCTCTTCGCAGTGCAAAATGGAATCTGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGCTCAAGAGGTCAGGTGACCCAGGTGAGGGTGAAGTTTTTGGATGA 567 0.5026 MTEVPRMFHLSRVAKGVISFTSSAYISKILGVSPSEAAVDLLNPHVVVSLTGLFLLLFSSILRQCEMDAGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLRVPLLRSRRKCSKPLFFSSSSLFAVQNGIWGEACCGGESYGSNWLKRSGDPGEGEVFG* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1503 188 FunFam 40S ribosomal protein S28 65 131 - -
Vvi8g1503 188 Gene3D - 66 131 IPR012340 -
Vvi8g1503 188 PANTHER 40S RIBOSOMAL PROTEIN S28 67 131 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vvi8g1503 188 SUPERFAMILY Nucleic acid-binding proteins 69 131 IPR012340 -
Vvi8g1503 188 Pfam Ribosomal protein S28e 71 130 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vvi8g1503 188 CDD S1_S28E 72 131 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vvi8g1503 188 ProSitePatterns Ribosomal protein S28e signature. 122 130 IPR028626 -
Vvi8g1503 188 Hamap 30S ribosomal protein S28e [rps28e]. 67 131 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1503 Vvi-Chr8 20848483 20853645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1503 67 131 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 4.66e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1503 K02979 - vvi:100246987 116.316