Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1500 ATGTCATCACGTTTTTGGACTGCTCAGGGTGACAGTGACACTGAGGAGGAGGAGAGTGATTATGAGGATGGAGTTGAAAGGGGAGGAGCAGCAGGTGAGTCTGCACCACATGCTGGCAGCAGATACCTACAGGCTAATGCTAGTGATAGTGATGATTCTGATGGTCAAAAGCGTGTTGTGCGATCTGCTAAAGACAAGCGGTTTGAGGAGATGTCTGCTACTGTTGATCAGATGAAGAATGCTATGAAGATCAATGACTGGGTCAGCCTACAAGAGAGCTTTGACAAAATAAATAAGCAGCTTGAGAAAGTCATGCGGGTTACAGAATCTGATAAAGTTCCTACCCTTTACATTAAGGCGCTTGTGATGTTGGAGGACTTTTTGAGTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGTAATGCCAAGGCCCTGAACTCAATGAAACAGAAATTGAAGAAGAACAATAAGCAGTATGAAGATCTGATTAATAAGTATAGGGAACATCCTGAGAGCGAAGAAGAAGGTGATGAGGATGAGGAGATGGAGGAGGATGAGGATTCTGGCTCAGAGTTTGAGGAGGACCCTTCAAAAATTGCAATGAGATCAGATTCTGAAGAAGACGAGGAGGATGGAGAGGATAGAGAAGATAGTGCTGCTGAAGCTGGTGGGGGTTGGGAGAAAAAGATGAGCAAGAAAGATAAGCTAATGGACAAGCAGTTCATGAAGGACCCAAGTGAGATTACATGGGATACGGTTAACAAGAAATTCAAGGAGATTGTGGCTGTTCGTGGTAGGAAAGGAACTGGAAGGATTGAGCAGGTCGAACAGCTTACTTTCTTGACAAGGGTTGCCAAGACCCCTGCCCAGAAGCTGGAGATCCTTTTCAGTGTCGTTTCTGCTCAGTTTGATGTTAATCCAAGTCTTAGTGGGCACATGCCAATAAATGTGTGGAAGAAGTGTGTGCAGAATATGCTTGTTATACTTGACATTCTAGTTCAGCATTCAAACATTTTGGTGGATGATGTTGTTGAGCCTGAAGAGAATGAAACCCAAAAAGGAGCAGACTATAAGGGGACAATTCGAGTTTGGGGAAATTTGGTTGCCTTCCTTGAGAGGATAGATGTGGAGTTCTTTAAGAGCTTGCAGTGCATTGATCCACACACTCGCGAGTATGTTGAAAGACTGAGGGATGAGCCTTTGTTTCTTGTGCTTGCCCAAAATGTCCAGGATTATTTAGAGCGAGTCGGGGATTTCAAGGCTGCTTCAAAGGTAGCTCTGAGGCGGGTTGAGCTCATCTATTATAAACCACAGGAGGTGTATGACGCAATGAAAAATTTGGCTGAACAAACAGAAGATACAGAGAACGGAGAATCAGAGGCAGGTGAGGAGCCCAGAGTTGAAGAAAGTAGGGGTCCACCTGCATTTGTTGTTACTCCTGAGGTGGTGCCTCGAAAACCCACATTTCCAGAGAATAGTAGGACTCTGATGGATATTCTAGTTTCCCTCATATACAATCATGGGGATGAACGGACTAAGGCTCGGGCTATGCTCTGTGACATTTACCACCATGCTATCCTGGATGAGTTTTCAACTGCCCGTGATCTGTTGCTGATGAGTCACTTGCAGGACAATGTTCAGCATATGGACATTTCAACGCAGATCCTTTTTAACAGGGCCATGGCACAGCTTGGACTGTGTGCATTTAGGGTTGGACTGATTGCTGAAGGACATGGTTGCCTGTCTGAACTATATTCAGGAGGGAGAGTAAAGGAATTGCTCGCACAAGGTGTTTCACAAAGTCGGTACCACGAGAAGACTCCAGAGCAGGAGAGGATTGAAAGGAGACGACAGATGCCTTACCACATGCACATAAATCTTGAGCTCCTGGAGGGAGTCCATCTAATATGTGCCATGCTCCTGGAGGTCCCAAACATGGCTGCCAATACGCACGATGCCAAGCGCAAGGTTATAAGTAAAACATTTCGGCGGTTGCTTGAGGTGAGTGAAAGGCAGACATTCACTGGCCCACCTGAAAATGTTAGAGACCATGTAATGGCTGCCACCAGGGCCCTTAGCAAGGGGGACTTCCAGAAAGCCTTTGATGTTATCAAGTCCCTTGATTTTTGGAAGCTCCTCAGGAACCGTGAGGATGTCCTTGAGATGCTGAGGGCGAAGATAAAGGAAGAGGCTCTGAGGACCTACCTTTTTACCTACTCATTATCCTATAATACTCTGAGCTTGGACCAGCTTACCAAAATGTTTGACCTTTCAGAAACTCTGACCCACAGTATCATCAGTAAGATGATGGTCATGGAAGAGTTGCATGCAAGCTGGGACCAGCCCACCCGTTGCATTGTTTTCCATGATGTGGAGCACACAAGGCTGCAGGCCTTGTCATTCCAGCTGACAGACAAGCTGACAATTCTTGCAGAAAACAACGAGCGGGCATATGAGGCTAAAATAGGTGGTGGTGGGTTGGATCTGCCACTAAGGCGGAGGGATGGCCAGGATTATGCTGGTGCAGCTTCTGTTGGTGGTAAATGGCAGGACAACTTTTCTTTCAGTCAGGGAAGGCAAGGTGGTGTGCGCACTGGATATGGTGTGGGTGGGAGGCCATTAGGTCCTGGCTCTTCTGCAGGCACCTTTTCAAGGGACAGAGGTGGTCAGTCACGAGGAACAGGAGGCTATTCAGGGGGCTACCAGAGCACTCGGTATCAAGATGCTGCATATGGGAGGACTGCTTATCAGACTAGTTCAGCTGTAAGGGGATCCCAGATGGATACTTCAACCCGCATGGTCAGTCTGAACAGGGGTGTTCGTGCTTAG 2841 0.4688 MSSRFWTAQGDSDTEEEESDYEDGVERGGAAGESAPHAGSRYLQANASDSDDSDGQKRVVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESDKVPTLYIKALVMLEDFLSQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYREHPESEEEGDEDEEMEEDEDSGSEFEEDPSKIAMRSDSEEDEEDGEDREDSAAEAGGGWEKKMSKKDKLMDKQFMKDPSEITWDTVNKKFKEIVAVRGRKGTGRIEQVEQLTFLTRVAKTPAQKLEILFSVVSAQFDVNPSLSGHMPINVWKKCVQNMLVILDILVQHSNILVDDVVEPEENETQKGADYKGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQDYLERVGDFKAASKVALRRVELIYYKPQEVYDAMKNLAEQTEDTENGESEAGEEPRVEESRGPPAFVVTPEVVPRKPTFPENSRTLMDILVSLIYNHGDERTKARAMLCDIYHHAILDEFSTARDLLLMSHLQDNVQHMDISTQILFNRAMAQLGLCAFRVGLIAEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERIERRRQMPYHMHINLELLEGVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALSKGDFQKAFDVIKSLDFWKLLRNREDVLEMLRAKIKEEALRTYLFTYSLSYNTLSLDQLTKMFDLSETLTHSIISKMMVMEELHASWDQPTRCIVFHDVEHTRLQALSFQLTDKLTILAENNERAYEAKIGGGGLDLPLRRRDGQDYAGAASVGGKWQDNFSFSQGRQGGVRTGYGVGGRPLGPGSSAGTFSRDRGGQSRGTGGYSGGYQSTRYQDAAYGRTAYQTSSAVRGSQMDTSTRMVSLNRGVRA* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1500 946 MobiDBLite consensus disorder prediction 136 156 - -
Vvi8g1500 946 MobiDBLite consensus disorder prediction 454 477 - -
Vvi8g1500 946 MobiDBLite consensus disorder prediction 177 196 - -
Vvi8g1500 946 MobiDBLite consensus disorder prediction 869 905 - -
Vvi8g1500 946 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 940 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi8g1500 946 MobiDBLite consensus disorder prediction 171 235 - -
Vvi8g1500 946 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 47 657 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi8g1500 946 ProSiteProfiles PCI domain profile. 625 797 IPR000717 -
Vvi8g1500 946 SUPERFAMILY "Winged helix" DNA-binding domain 724 796 IPR036390 -
Vvi8g1500 946 MobiDBLite consensus disorder prediction 1 65 - -
Vvi8g1500 946 MobiDBLite consensus disorder prediction 135 158 - -
Vvi8g1500 946 MobiDBLite consensus disorder prediction 887 905 - -
Vvi8g1500 946 MobiDBLite consensus disorder prediction 51 65 - -
Vvi8g1500 946 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 866 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi8g1500 946 Coils Coil 146 173 - -
Vvi8g1500 946 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 726 814 IPR000717 -
Vvi8g1500 946 Pfam PCI domain 665 793 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1500 Vvi-Chr8 20821805 20825474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1500 1 946 Eukaryotic Initiation Factors Gene Family AT3G56150 69.053 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1500 K03252 - vvi:100252123 1717.21