Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1493 ATGAATCGACTCGCGCCTCTATCAGAAGAACCCACAAATGACGAGGAAGAAGACAACAACAACAGCTCCAAGAAAGTAAGTTCATGGAGAAACTGGCTGAAGAGCCACTTCTCTCTACTCTTCAACAAGAAATCTGATCTGAAGATCCTCTTAAGCGTTCTGGGTTGTCCTCTTTTTCCTATCTCACCCCATGCCGGCCAACCCAACACCCACGTTTCGTCGTCGGCGGAGTACATAATACAGCATTTCACGGCGGCGACCGGTTGCCGGAAACTGGAGGGCAAGGTGAAGAATGTGTTCGCCACGGGAAAAGTGAGGATGGCGATGGTGGACGAGCTCGGGTCGAGCGGCTCATCAACCGCCGTTGGACCCACCGGAGTTTCGCAAAAGGGTTGCTTTGTGATGTGGCAGATGGTTCCTGATAAGTGGCTGATCGAGCTGGTGGTGGGTGGCCACAAGGTTGTCGCTGGTAGTGATGGTAACGTCGCTTGGCGCCACACGCCGTGGATCGGCGCCCACGCCGCCAAAGGCGGCGTCCGCCCTCTCCGGCGAGTTCTTCAGGGATTGGACCCACTGGCGGTATCAGCTGTGTTCTCCTCAGCCCAATACATGGGGGAGAAGCGAATCATGGGCGTCGACTGCTTCGTCTTGAAATTGTCAGCCGATCACACGGACCTCGCTGATCGCAGCGACAACACAGCGGAGATGATCAAGCACGTGATCTTCGGCTACTTCAGTCAACGGAGTGGACTGCTGGTGTACCTAGAAGATTCCTATTTAACGCGCATACAATCACCTGGGTCCCGCCCCACGTACTGGGAGACCACCATGGCCACCAAGATCGAGGACTATCGGACGGTCGAGGGCGTGATGATCGCTCACGGCGGTCAATCAAGCGCCATCATCACACGGTTCGGAGACAATTTGAAGGTGGGGCCCGCGATCACGAGGATGGAGGAGACCTGGACCATTGACGATCTGGCATTCAACGTCCCAGGGTTGTCCATGGATTGCTTCATCCCGCCTGAAGAAGTACAGAAAGATTACCCCGAGGAGAACCTTGATTGGAGATCGCCACTGCACCGCACTCCCACGCCGCCGGAGAATGAGAAACTTGCGTCACCGGGACCCCCTCCGATTCGAGTCTCGATCACCGAAATGGCAGGGCGAGGCGTGTTCGCGACTCGGAGGATCGGAAGCGGAGATCTCATCCACACAGCGAAGCCTCTCGTATCTCATCCTTCGCTCTCCAGTATTCATAGCGTCTGTTACTTTTGCCTCAGAAAACTCAAACCTGTAACCTCTTCTGAAGATTGCAATGTTCGATTTTGTAGCCAGGAATGCGAAGAACAATCCAAGGTTTTTGTCGCAGTCGAGAGGAAAGCAGATTGGTCAGCTTATGATGACTACTGTAGAACTCGAGGTTTGAAATACCCACTTCTTGTGAAGCGCTTGGCTTGTATGGTTGTATCAGGAGTGGCATCAGCAGACTGTCTTGACATACTTCAACCTGCAAGTTTATCATCTGAGATGATTTCAGAGATGGGAGAGGGGTTTAGCTTGTTACAGAGTGCCTTCATGAAGGCAAAAGCCAGAGATGAATGCATGGCATTTCTGACCGAGCAATGGTACATTAACGTGCTGGCACGGTTTCGTATTAATTCATTTCGCATTGAATTGGCTGGAGGGTCATATGAAGATCTTCATTCATTAGCAGCAGCTTCTGTAGAAACTGAAGCTGCTGTTGGCAATGCTGTCTATATGCTTCCATCTTTCTACAATCATGACTGTGATCCGAATGTACATATCATATGGATAGATAACGTGAATGCAAGATTGAAAGCTCTCCGTGAAATCGAAGCAGGTGAAGAACTCCGAATCTGCTACATCGACGCAAGTATGGATCATGATGCTCGTCAAACCATCTTGTTCCAAGGGTTTGGTTTTAGGTGCAGTTGCCTTCGTTGTTCTTCTGGTGATTAA 1983 0.5124 MNRLAPLSEEPTNDEEEDNNNSSKKVSSWRNWLKSHFSLLFNKKSDLKILLSVLGCPLFPISPHAGQPNTHVSSSAEYIIQHFTAATGCRKLEGKVKNVFATGKVRMAMVDELGSSGSSTAVGPTGVSQKGCFVMWQMVPDKWLIELVVGGHKVVAGSDGNVAWRHTPWIGAHAAKGGVRPLRRVLQGLDPLAVSAVFSSAQYMGEKRIMGVDCFVLKLSADHTDLADRSDNTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGSRPTYWETTMATKIEDYRTVEGVMIAHGGQSSAIITRFGDNLKVGPAITRMEETWTIDDLAFNVPGLSMDCFIPPEEVQKDYPEENLDWRSPLHRTPTPPENEKLASPGPPPIRVSITEMAGRGVFATRRIGSGDLIHTAKPLVSHPSLSSIHSVCYFCLRKLKPVTSSEDCNVRFCSQECEEQSKVFVAVERKADWSAYDDYCRTRGLKYPLLVKRLACMVVSGVASADCLDILQPASLSSEMISEMGEGFSLLQSAFMKAKARDECMAFLTEQWYINVLARFRINSFRIELAGGSYEDLHSLAAASVETEAAVGNAVYMLPSFYNHDCDPNVHIIWIDNVNARLKALREIEAGEELRICYIDASMDHDARQTILFQGFGFRCSCLRCSSGD* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1493 660 Pfam Protein of unknown function (DUF620) 99 342 IPR006873 -
Vvi8g1493 660 Gene3D - 474 555 - -
Vvi8g1493 660 SUPERFAMILY SET domain 378 653 IPR046341 -
Vvi8g1493 660 SMART set_7 378 636 IPR001214 GO:0005515
Vvi8g1493 660 Gene3D - 422 473 - -
Vvi8g1493 660 MobiDBLite consensus disorder prediction 355 378 - -
Vvi8g1493 660 ProSiteProfiles SET domain profile. 378 630 IPR001214 GO:0005515
Vvi8g1493 660 PANTHER LIPASE 3 347 IPR006873 -
Vvi8g1493 660 CDD SET_SMYD 581 656 - -
Vvi8g1493 660 MobiDBLite consensus disorder prediction 1 25 - -
Vvi8g1493 660 Pfam SET domain 389 629 IPR001214 GO:0005515
Vvi8g1493 660 Gene3D SET domain 391 656 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1493 Vvi-Chr8 20728208 20735075 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi8g1493 DUF620 1.6e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1493 - - cic:CICLE_v10013489mg 922.924