Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1489 ATGAGAACTTCTTGGGCTGATTCTGTCGCTAATTCTACATCTGACAACTTAGTTTCTGGTTCTTCCGATAATAGTGGGTTTGGCGCCGGTGCCCCTTCACGATCGGGCCGATCCTCTTACGTACCACCGCATCTTCGTAACAGGCCACCATCATCAGATCCGCCTGCGCCCTCATACACCTCCCAGGCATCAGCTGGTTATGGTGGCCCTCCAGGTGGAACCCGCTGGGGTGGTGGTTCTCGGGCCGATTTCGGGCGGTCAGGTGTGACCACAGGTGTGACCAGTGGTGGTCGAGTTGGTGGTAGCAGTGGTTGGAACACTAGAAGTGGGGGGTGGGACCGTGGGAGGGATCGCGAGGTGAACCCCTTTGGTGATGATGATAATGCAGAGCCTGCATTCAGTGAGCAGGAAAATACAGGTATCAACTTTGATGCGTATGAAGATATACCGGTGGAGACAAGTGGGGATAATGTGCCACCCCCAGTTAATACATTTGCCGAGATTGACTTGGGGGAGGCATTGAATCAAAACATCAGGCGGTGCAAGTATGTGAAGCCAACTCCTGTTCAGCGTCATGCGATTCCAATTTCTCTTAGTGGGAAGGATTTGATGGCTTGTGCTCAGACGGGATCAGGCAAAACTGCAGCCTTTTGCTTCCCAATTATCAGCGGAATAATGACGGGGCAGTTTGCGCAAAGACCACGTGGAGCACGGACTGTGTATCCACTTGCTCTTATTCTCTCTCCCACAAGGGAACTCTCATGTCAGATACATGATGAAGCTAGAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTAGTTGCTTACGGAGGAGCACCAATCAACCAACAGTTGCGAGAGCTTGAGAGAGGAGTTGACATTCTTGTGGCAACTCCAGGGCGATTGGTAGATTTGCTTGAGAGGGCTAGAGTATCATTGCAGATGATCAGATACTTAGCTCTTGATGAGGCAGACCGGATGCTTGATATGGGTTTTGAGCCTCAAATTAGAAAGATAGTAGAACAAATGGACATGCCTCCGCCAGGTGTAAGACAGACAATGCTGTTCAGTGCCACCTTTCCCAAAGAGATACAGAGACTGGCGTCTGATTTTCTTTCAAGTTACATATTTTTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATTTGATTGTTCAAAGAGTTGAATTTGTTCACGAGTCTGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCCCAGAGAGCCAATGGAGCTCATGGCAAGCAATCTCTGACTTTAGTTTTCGTGGAGACAAAAAAGGGTGCTGACTCATTGGAACACTGGTTGTGTATGAATGGTTTTCCTGCAACTACTATTCATGGTGATAGAACACAGCAGAGAACACGCATTGAGATCATTTAA 1401 0.4839 MRTSWADSVANSTSDNLVSGSSDNSGFGAGAPSRSGRSSYVPPHLRNRPPSSDPPAPSYTSQASAGYGGPPGGTRWGGGSRADFGRSGVTTGVTSGGRVGGSSGWNTRSGGWDRGRDREVNPFGDDDNAEPAFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPIISGIMTGQFAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQRTRIEII* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1489 466 MobiDBLite consensus disorder prediction 1 32 - -
Vvi8g1489 466 FunFam Probable ATP-dependent RNA helicase DDX4 126 380 - -
Vvi8g1489 466 Gene3D - 381 466 IPR027417 -
Vvi8g1489 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 460 IPR027417 -
Vvi8g1489 466 MobiDBLite consensus disorder prediction 87 109 - -
Vvi8g1489 466 CDD DEADc_DDX3_DDX4 164 384 IPR044763 GO:0003724|GO:0005524
Vvi8g1489 466 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 133 462 - -
Vvi8g1489 466 MobiDBLite consensus disorder prediction 1 139 - -
Vvi8g1489 466 MobiDBLite consensus disorder prediction 111 125 - -
Vvi8g1489 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 380 IPR027417 -
Vvi8g1489 466 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 163 191 IPR014014 GO:0003724
Vvi8g1489 466 Pfam DEAD/DEAH box helicase 187 367 IPR011545 GO:0003676|GO:0005524
Vvi8g1489 466 Gene3D - 120 380 IPR027417 -
Vvi8g1489 466 SMART ultradead3 182 393 IPR014001 -
Vvi8g1489 466 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 378 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1489 Vvi-Chr8 20689429 20694742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1489 161 459 Eukaryotic Initiation Factors Gene Family AT3G19760 29.333 3.35e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1489 K11594 - vvi:100250337 880.552