Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1471 ATGCCGGCGGGACACGGACTCCGATCGAGGACTCGAGACTTGTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTCCCTTGACAACGTACCTGAGAACCTTTCGCATCGGAGACTACGTGGACATCAAAGTAAACGGCGCCGTCCACAAGGGCATGCCCCACAAGTTCTACCATGGCCGCACTGGTAAGGTCTGGAACGTCACCAAGCGCGCCATCGGTGTTGAAGTAAACAAGCAGGTGGGTAACAGGATAATCAAGAAGCGGATCCATGTGCGAGTGGAGCATGTGCAACCTTCAAGGTGTACTGAGGAATTCCGGCTGAGGAAGTTGAAGAATGATGAATTGAAGGCAGAGGCAAAAAAGAACGGAGGTCAGATCATCAGCACGAAAAGGCAGCCAGAGGGGCCTAAACCAGGTTTCATGGTGGAAGGTGCAACCTTGGAAACTGTTACTCCAATTCCTTATGATGTTGTCAATGATCTCAAGGGTGGCTACTAG 498 0.5161 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFRIGDYVDIKVNGAVHKGMPHKFYHGRTGKVWNVTKRAIGVEVNKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKLKNDELKAEAKKNGGQIISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1471 165 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Vvi8g1471 165 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vvi8g1471 165 FunFam 60S ribosomal protein L21 99 159 - -
Vvi8g1471 165 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vvi8g1471 165 Gene3D - 99 157 - -
Vvi8g1471 165 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Vvi8g1471 165 FunFam 60S ribosomal protein L21 1 98 - -
Vvi8g1471 165 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1471 Vvi-Chr8 20557372 20559410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1471 1 165 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 86.061 9.39e-108 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1471 K02889 - vvi:100241755 342.428