Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1469 ATGGACAAGGCCACTGAGAGAGAAACCCATGATTTCATGAACGTTGAATCTTTCTCACAACTTCCCTTCATTCGTCCTGCACCTGTTAAAGAGAAAGGTATTCGCCTGTTTGGTAAAGAATTTGGAGGTCACCATGACCCAGAAGAGCAGTCAGAGTCCGTGGAGACTAACATGTGTGAGGATGTCAAGGACAGTGAAAATGGCGAAAGTGGTAGAAGATTTGAATGCCATTACTGCTGCAGAAACTTCCCTACTTCTCAAGCGTTGGGAGGTCACCAGAACGCCCACAAGAGAGAGCGCCAACACGCCAAACGTGCCCATCTTCAGTCTGCCATGGTCCATAGTGGCCTCTCAGATGCACACATGTACGGCCTGGTCAATTACAGGCTCGGCTCCGCCCCCACGCCGCCCATCACCTACCCGTCATGGGGTAGCCAAGCCATTTCTAGTAACGGCAGGTTTTATGGAAGTCATGGATCCTTCTCGCAGCCACCAATTAACGGAAACCCTTTGGCCTTATGGCGAATCCCGGCCTCCGTACAAACTACTCCCACTTTCAGTCGCGACCGTTCATCACACCATCCACTGCCATTATTCGCCGGTGATGACTTGAAGCCCTCGTCGCATGTCGGTGGCTCTACCTCCCAAAGCAGATACGTCTACGAATCAACAAAGCCCGGCGTGCAAGACCATGTGAGTTTGGATCTCCATCTGTAA 717 0.5132 MDKATERETHDFMNVESFSQLPFIRPAPVKEKGIRLFGKEFGGHHDPEEQSESVETNMCEDVKDSENGESGRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVHSGLSDAHMYGLVNYRLGSAPTPPITYPSWGSQAISSNGRFYGSHGSFSQPPINGNPLALWRIPASVQTTPTFSRDRSSHHPLPLFAGDDLKPSSHVGGSTSQSRYVYESTKPGVQDHVSLDLHL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1469 238 Pfam C2H2-type zinc finger 73 98 - -
Vvi8g1469 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Vvi8g1469 238 MobiDBLite consensus disorder prediction 184 216 - -
Vvi8g1469 238 PANTHER ZINC FINGER PROTEIN GIS 1 238 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Vvi8g1469 238 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Vvi8g1469 238 SUPERFAMILY beta-beta-alpha zinc fingers 71 102 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1469 Vvi-Chr8 20543918 20544634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1469 1 238 C2H2 Transcription Factor Family AT3G58070 43.911 3.33e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1469 - - vvi:100267595 502.671