Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1457 ATGTTCTGCTGCGGAGGTGAGGAGGAGGAAAACCATGGCCAGCCTGCTAACCAATATACAGCTCCACCAAGAGGAGGAAATGCCTATGGCGGCGGTGGAACGGGAGAGCCCAGGAATTCCAATACTGCCAAAAGCGGAGCTCCCCAGAAGATTCTACCCATCGAGACACCGGCCATGTCATTGGACGAGTTGAATAGGTTAACTAGTAACTTTGGATCAAAGGCTTTGATCGGAGAAGGCTCCTACGGCAGGGTTTTCTACGCAAAGTTGAGCAGTGGTGAGGGCGCAGCCATAAAGAAGCTGGACACCAGCTCCTCCCAAGAGCCAGACTCTGATTTTGCTGCTCAGTTATCAATAGTTTCAAGACTTACGCATGAGAATTTCGTGGGGTTGCTGGGGTATTGTTTGGAGGCCGACAACAAAATCCTAGTATATCAGTTTGCAACAATGGGCTCTCTACATGATATGCTACATGGGAGGAAAGGTGTACAAGGGGCAGAGCCTGGTCCGGTTCTGAGTTGGAACCAGAGAGTTAAAATTGCTTATGGGGCAGCCAAAGGCCTGGAGTATCTGCACGAAAAAGTTCAGCCTTCAATAGTTCATCGAGATGTTAGATCCAGCAATGTTCTTCTGTTTGATGATTTTCTAGCCAAAATTGCGGATTTCAACCTGTCAAACCAGTCATCGGATACAGCAGCCCGATTGCATTCCACTCGGGTCTTGGGAACATTTGGCTATCATGCACCAGAGTATGCCATGACAGGGCAGATAACACAGAAGAGTGACGTTTACAGTTTCGGAGTTGTACTTTTAGAGCTTTTGACAGGAAGAAAGCCAGTAGACCATACAATGCCCAAAGGACAACAGAGTCTGGTTACTTGGGCAACTCCAAGATTGAGTGAGGATAAAGTGAAGCAATGTGTGGATCCTAAACTCAACAATGACTACCCAGCAAAAGCAATTGCAAAGATGGCAGCAGTTGCCGCACTTTGTGTTCAGTATGAAGCAGACTTCAGGCCAAACATGACCATTGTCGTGAAGGCTCTTCAGCCACTTCTCAATCCAAAACCAGCAGGCCCTGATTCTAATGCATAG 1095 0.4758 MFCCGGEEEENHGQPANQYTAPPRGGNAYGGGGTGEPRNSNTAKSGAPQKILPIETPAMSLDELNRLTSNFGSKALIGEGSYGRVFYAKLSSGEGAAIKKLDTSSSQEPDSDFAAQLSIVSRLTHENFVGLLGYCLEADNKILVYQFATMGSLHDMLHGRKGVQGAEPGPVLSWNQRVKIAYGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFDDFLAKIADFNLSNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPAKAIAKMAAVAALCVQYEADFRPNMTIVVKALQPLLNPKPAGPDSNA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1457 364 FunFam probable protein kinase At2g41970 44 147 - -
Vvi8g1457 364 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Vvi8g1457 364 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Vvi8g1457 364 SUPERFAMILY Protein kinase-like (PK-like) 48 349 IPR011009 -
Vvi8g1457 364 FunFam PTI1-like tyrosine-protein kinase 3 149 358 - -
Vvi8g1457 364 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vvi8g1457 364 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Vvi8g1457 364 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Vvi8g1457 364 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1457 364 MobiDBLite consensus disorder prediction 1 47 - -
Vvi8g1457 364 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
Vvi8g1457 364 Pfam Protein tyrosine and serine/threonine kinase 76 349 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1457 Vvi-Chr8 20411204 20413176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1457 36 350 Receptor kinase-like Gene Family AT4G02010 45.938 3.05e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vvi8g1457 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1457 - - vvi:100267489 711.449