Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1456 ATGGCTCCTGGAGGCAGCACTTACAAAGAAGTTCTTGAGTCTCACTCCACAGTGACTGACTATGACATAGCAATGACAAAAGCAGACACTAATCTTACACCTGCAAAAACTACTGCTGGCTTGAGTGGAAAAAAGGGAATCTCTTCACCCAATGGTGTCCATGAGCTACTTGAATGTCCTGTATGCACAAGTTTAATGTACCCTCCGATCTACCAGTGTCCAAGTGGCCACACCTTATGTTCAAACTGCAAGAGTAGAGTGCACAACTGTTGCCCAACTTGCCGCCATGAGCTTGGAGATATAAGGTGTTTGGCTTTGGAGAAAGTTGCAGAGTCATTAGAACTTCCCTGCAGATACCAAAGTCTAGGTTGTCATGATATCTTTCCATACTACAGCAAGCTCAAGCACGAGCAACAGTGTCGATTCCATCCATACAACTGCCCATATGCTGGGTTTGAGTGCTCTGTCACTGGGGACATCCCAACCCTTGTTGAGCATCTCAAGGGTGATCACAAGGTTGACATGCACGATGGGTGTACCTTCAACCATCGATATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACTGTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCCAGCTTGGAACAGCACCAGTCTACATGGCCTTTCTGCGATTCATGGGTGATGACAATGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACAGCCGCAAGCTAATATGGCAGGGAGTTCCAAGAAGTATCAGGGACAGTCATAGGAAAGTTCGCGACAGTCAGGATGGACTCATCATTCAAAGGAACTTGGCTCTCTACTTCTCTGGAGGTGATCGGCAAGAGCTGAAGCTGAGGGTCACCGGCCGAATTTGGAAAGAAAGTGAATTATGGAAAGACAATGGATGTTAG 948 0.461 MAPGGSTYKEVLESHSTVTDYDIAMTKADTNLTPAKTTAGLSGKKGISSPNGVHELLECPVCTSLMYPPIYQCPSGHTLCSNCKSRVHNCCPTCRHELGDIRCLALEKVAESLELPCRYQSLGCHDIFPYYSKLKHEQQCRFHPYNCPYAGFECSVTGDIPTLVEHLKGDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGKQFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKKFSYSLEVGGNSRKLIWQGVPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVTGRIWKESELWKDNGC* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1456 315 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Vvi8g1456 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515
Vvi8g1456 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Vvi8g1456 315 CDD Sina 173 301 - -
Vvi8g1456 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 111 IPR013083 -
Vvi8g1456 315 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
Vvi8g1456 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 50 306 - -
Vvi8g1456 315 SUPERFAMILY RING/U-box 49 101 - -
Vvi8g1456 315 CDD RING-HC_SIAHs 57 95 - -
Vvi8g1456 315 SUPERFAMILY TRAF domain-like 112 304 - -
Vvi8g1456 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 166 IPR013083 -
Vvi8g1456 315 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi8g1456 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Vvi8g1456 315 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1456 Vvi-Chr8 20406504 20408606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1456 1 306 C3H Transcription Factor Family AT2G41980 81.046 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1456 K04506 - vvi:100233085 676.396