Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1449 ATGGAGCTAGCTCTGAGCTTAGGTGATGCCTCCAAGCCCTTTACATTTCTTGACAAGACCCAGAAGATGGTCAACAAAGATGCAGGGTTCTGCATGGGTTTAGGGACTGGAATTATTGGGAAGGGACAGGGCCATGGAGGTGAAGAAGATGAGAGGAAGGTTTCATCAGATCCGCCCGTTCAGCTTGATCTTCTACCGTTTTCCCCTGTTCCTCGCCATCATCCTTCTTCGCAGCTTCGCTTCCCGTGGCTCGCTGATAACCTGATGTCTGAACCCGGTTCATCAGATGGATCCGGGAGAGCCCTGGACGTGAACCGGTTTCCGGTGGCTGTCGCGGCGGCCGAGGATGCGGACGACGGAGGAGCGCTGTCGTCTCCGAACAGCACAGTCTCATCTTTTCAGATGGATTTTTCGATATACAGAAGCGGAAATGGAGGAAGGAGCAAGAGAGATTTGGAGGCAACCGTGAATGAAGTTGAGACATCGAGAGCGAGCGACGATGATGAGAATGGTTCAACTCGGAAGAAACTCAGACTCTCTAAAGAACAATCTGCCTTCCTTGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCTAAGCAAAAGCTGGCTCTAGCCAAACAACTGAATCTCCGGCCACGCCAAGTAGAAGTGTGGTTCCAGAACAGAAGAGCAAGGACAAAGCTGAAGCAGACGGAGGTGGATTGTGAGTATTTAAAGAGATGCTGTGAGACACTGACAGAAGAGAACAGAAGGTTACAGAAGGAGTTGCAAGAATTAAGAGCTTTGAAAACTTCTCAACCCTTCTACATGCAGCTTCCTGCCACCACTCTCACCATGTGCCCTTCCTGCGAGCGCGTGGCCACCACCTCCACCTCTTCCTCCGCCGCCGCCGCCGCCCCCACCTCCACCTCCGCCACCCTTGCCAGAACCAGACTGTTCCCCTTTTCACAAGCCCATGTGCACCAGGCTCCAGCCCACCAGGCTGCTTCATGA 996 0.5261 MELALSLGDASKPFTFLDKTQKMVNKDAGFCMGLGTGIIGKGQGHGGEEDERKVSSDPPVQLDLLPFSPVPRHHPSSQLRFPWLADNLMSEPGSSDGSGRALDVNRFPVAVAAAEDADDGGALSSPNSTVSSFQMDFSIYRSGNGGRSKRDLEATVNEVETSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTSTSSSAAAAAPTSTSATLARTRLFPFSQAHVHQAPAHQAAS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1449 331 CDD homeodomain 174 231 IPR001356 GO:0003677
Vvi8g1449 331 MobiDBLite consensus disorder prediction 146 177 - -
Vvi8g1449 331 SMART HOX_1 172 234 IPR001356 GO:0003677
Vvi8g1449 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 304 - -
Vvi8g1449 331 MobiDBLite consensus disorder prediction 144 177 - -
Vvi8g1449 331 Pfam Homeobox associated leucine zipper 230 264 IPR003106 GO:0006355|GO:0043565
Vvi8g1449 331 SMART halz 230 273 IPR003106 GO:0006355|GO:0043565
Vvi8g1449 331 Coils Coil 236 266 - -
Vvi8g1449 331 ProSiteProfiles 'Homeobox' domain profile. 170 230 IPR001356 GO:0003677
Vvi8g1449 331 CDD bZIP 223 262 - -
Vvi8g1449 331 SUPERFAMILY Homeodomain-like 165 231 IPR009057 -
Vvi8g1449 331 Gene3D - 178 228 - -
Vvi8g1449 331 Pfam Homeodomain 174 228 IPR001356 GO:0003677
Vvi8g1449 331 ProSitePatterns 'Homeobox' domain signature. 205 228 IPR017970 GO:0000981|GO:0006355
Vvi8g1449 331 FunFam Homeobox-leucine zipper protein 18 159 235 - -
Vvi8g1449 331 Pfam HD-ZIP protein N terminus 25 133 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1449 Vvi-Chr8 20357360 20358732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1449 59 309 Homeobox Transcription Factor Family AT5G47370 55.598 4.15e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi8g1449 HD-ZIP_N 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1449 K09338 - vvi:100265773 568.926