Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1448 ATGGGTGATGAAACATCGGACCACACAATGAATCTTGATTTGAATCTAGGTCCAGGTCCTGAGCCCGGATCCGGATCGAATGACCCGGTGAGCCTGAATGATTGGGTTCAAGAACCTGTTCATAGAATTAGGGAATCGTTGAGGCTTAGGACGCGGCAGCGTTGGAGGTGGCGACAGGTTCAGATTCCTCTTGAAGCTAGAAACATTTCTATGGAATTGATGGCCAATACCGGCAATGGGAGCAGACCACAGGAGGGTGAGGGAAGTGTTGCGGCTGAGGAAAGAGACAATGAAGTGCCCAAAATGTGTGAAAATAAGACTACACATGTGGAGGATGAGGGGTTGGGTGGAAAGGATGATATTGAAAAGGGTAGCAGTGGTGAAGGGAGTTTTTTCGATTGTAATATTTGTTTGGACTTGGCTAGGGACCCTGTTGTGACTTGTTGCGGTCATTTGTTTTGTTGGCCATGCCTTTACCGATGGTTACATGTGCATTCGGATGCTAAGGAATGTCCAGTATGTAAGGGAGAGGTGACTGTTAAGAATGTGACCCCAATTTATGGCCGTGGGAACAACATCCATGAGCCTGAGGAGGATTCGAGTCTCAAGGTTCCTCTTAGGCCACATGCAAGGAGGATTGAGAGCTTTAGGCAAACGATTCAAAGGAATGTTGGATTTCCAGTTGAAGAAATGATTCGGCGTCTTGGAAGCAGAATTGATTTAACCCGGGATTTAGTTCAGAATCAGGATCAGGATGGGGCCCGTGATACACTTGAGAGAAGTAATTCTTTGATTAATCGGCTCCTCACTTCTCGGGGAATTCGCAGGGAGCAGAATGTAACTGTGCCCACTGATGATGTGGTGGATTTAACACAGAGCGGCACAAATAACTCTGAGGCTGTGGAAAGCCGCAGGATTCCATCATTGTTTCCGCGAAGATCACAAGCTCATAGATCTAGTACTCTTTCTTCATTTTCGTCCGCATTTGAGGCATACCTCCGTAGCCAACCTATAGGAAGGCAAGAGCAGCCTCCACCAGTTGATGATAGAGATTCTTTCTCAAGCATTGCTGCTGTTATACACTCAGAGAGTCAAACAGTGGATACTGCTGTTGAAATAGACTCTATGGTGTCTCTTTCTACTTCATCTTCCAGAAGACGAAATGATGCTTCAAGAGTTTCAGATGTGGACAGCGGAGATTCACGTGCACCTAGAAGGAGAAGATTGAACTAG 1233 0.4631 MGDETSDHTMNLDLNLGPGPEPGSGSNDPVSLNDWVQEPVHRIRESLRLRTRQRWRWRQVQIPLEARNISMELMANTGNGSRPQEGEGSVAAEERDNEVPKMCENKTTHVEDEGLGGKDDIEKGSSGEGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNVTPIYGRGNNIHEPEEDSSLKVPLRPHARRIESFRQTIQRNVGFPVEEMIRRLGSRIDLTRDLVQNQDQDGARDTLERSNSLINRLLTSRGIRREQNVTVPTDDVVDLTQSGTNNSEAVESRRIPSLFPRRSQAHRSSTLSSFSSAFEAYLRSQPIGRQEQPPPVDDRDSFSSIAAVIHSESQTVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1448 410 MobiDBLite consensus disorder prediction 288 303 - -
Vvi8g1448 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 111 310 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi8g1448 410 FunFam E3 ubiquitin-protein ligase RMA3 102 223 - -
Vvi8g1448 410 MobiDBLite consensus disorder prediction 388 410 - -
Vvi8g1448 410 MobiDBLite consensus disorder prediction 75 95 - -
Vvi8g1448 410 ProSiteProfiles Zinc finger RING-type profile. 134 175 IPR001841 -
Vvi8g1448 410 MobiDBLite consensus disorder prediction 378 410 - -
Vvi8g1448 410 SMART ring_2 134 174 IPR001841 -
Vvi8g1448 410 MobiDBLite consensus disorder prediction 1 31 - -
Vvi8g1448 410 CDD RING-HC_AtRMA-like 132 175 - -
Vvi8g1448 410 SUPERFAMILY RING/U-box 130 188 - -
Vvi8g1448 410 MobiDBLite consensus disorder prediction 288 322 - -
Vvi8g1448 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 222 IPR013083 -
Vvi8g1448 410 Pfam Zinc finger, C3HC4 type (RING finger) 134 174 - -
Vvi8g1448 410 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1448 Vvi-Chr8 20342555 20343787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1448 1 401 C3H Transcription Factor Family AT3G58030 50.575 1.03e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1448 K10666 - vvi:100260713 781.556